Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18e19
         (615 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006834-7|AAF40003.2|  176|Caenorhabditis elegans Lipid deplete...    98   4e-21
AL132943-3|CAB81974.1|  345|Caenorhabditis elegans Hypothetical ...    30   1.1  
Z81564-4|CAB04574.1|  432|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z50863-5|CAA90738.2|  746|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z50863-4|CAL36493.1|  412|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z49153-2|CAA89023.2|  746|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z83218-3|CAB05688.1|  330|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AC084156-2|AAK68490.2|  243|Caenorhabditis elegans Hypothetical ...    27   8.1  

>AC006834-7|AAF40003.2|  176|Caenorhabditis elegans Lipid depleted
           protein 5 protein.
          Length = 176

 Score = 98.3 bits (234), Expect = 4e-21
 Identities = 58/161 (36%), Positives = 83/161 (51%), Gaps = 2/161 (1%)
 Frame = +1

Query: 103 AGLSKNHLSRFKGAFSTYNVRYADADPTCRKEAPKIENESVLALPEEARHQKALDSTIVV 282
           AG S+  LS    AF   +    +   T   +A K+E   +L  P +         T V 
Sbjct: 4   AGASRC-LSAGNTAFRCLSTGKDNLPVTRSHDAKKVELNDILDKPSQ--------KTPVK 54

Query: 283 PTKADLSPILGVPEEHIKTRRVRIYQPAKNAMQSGTNNIHHWEMEFDTRQRWENPLMGWT 462
            +  +   I GVP +H   R  RI++PA+   QS   N   W +E D RQRWENPLMGW+
Sbjct: 55  VSSDETMDIGGVPLDHQDARTARIFRPARETTQSAWGNTKSWTIELDNRQRWENPLMGWS 114

Query: 463 SSGDPLSNV--KIQFRSPDEAIEHCEKNGWMWYIDVP*NRE 579
            + DPLSNV   ++F + ++AI  CEKN W + ++ P  R+
Sbjct: 115 GTADPLSNVGMDLKFATKEDAIAFCEKNRWEFDVEEPHERK 155


>AL132943-3|CAB81974.1|  345|Caenorhabditis elegans Hypothetical
           protein Y116F11B.6 protein.
          Length = 345

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 20/90 (22%), Positives = 41/90 (45%)
 Frame = +3

Query: 180 SNMPKGST*N*KRIRFGLARRSSASKSTGFHYCSANEGRSQPHFRSPRRTY*DSPCTYLS 359
           S+  +GS  N + I F        S +   H  +  +   +PH+  P   + D+ C Y  
Sbjct: 6   SSHVQGSAQNQQLIHFDELAAFLESSAQAPHILNGLQAGDKPHYPGPVPIFYDNNCNYDE 65

Query: 360 TCEECNAEWYK*YPSLGNGI*HSSTLGKSS 449
             ++ N++  + +P + +G  H+S + K +
Sbjct: 66  VFQQQNSQ--ELFPLIRDGGLHNSNMNKEN 93


>Z81564-4|CAB04574.1|  432|Caenorhabditis elegans Hypothetical
           protein K05C4.4 protein.
          Length = 432

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +1

Query: 94  CQTAGLSKNHLSRFKGAFSTYNVRYADADPTCRKEAPKIENESVLALPE 240
           C   GLS N++  F  +F+TY   +    PT ++   K E  + LAL E
Sbjct: 351 CTVLGLSNNNIKEFARSFATY---FFKRIPTLKRIDDKPEKMAPLALEE 396


>Z50863-5|CAA90738.2|  746|Caenorhabditis elegans Hypothetical
           protein C14H10.2a protein.
          Length = 746

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 331 IKTRRVRIYQPAKNAMQSGTNNIHHWEMEFDTRQRWEN 444
           IKT   R Y+ AK  +++    IH +E+ ++  ++ EN
Sbjct: 572 IKTELERRYEEAKYRLKNALEKIHDYELLYEAAKKSEN 609


>Z50863-4|CAL36493.1|  412|Caenorhabditis elegans Hypothetical
           protein C14H10.2b protein.
          Length = 412

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 331 IKTRRVRIYQPAKNAMQSGTNNIHHWEMEFDTRQRWEN 444
           IKT   R Y+ AK  +++    IH +E+ ++  ++ EN
Sbjct: 238 IKTELERRYEEAKYRLKNALEKIHDYELLYEAAKKSEN 275


>Z49153-2|CAA89023.2|  746|Caenorhabditis elegans Hypothetical
           protein C14H10.2a protein.
          Length = 746

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 331 IKTRRVRIYQPAKNAMQSGTNNIHHWEMEFDTRQRWEN 444
           IKT   R Y+ AK  +++    IH +E+ ++  ++ EN
Sbjct: 572 IKTELERRYEEAKYRLKNALEKIHDYELLYEAAKKSEN 609


>Z83218-3|CAB05688.1|  330|Caenorhabditis elegans Hypothetical
           protein C31A11.6 protein.
          Length = 330

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 414 HFPMMDIICTTLHCILRRLINTYTASLNM 328
           H PM  ++C  + CIL  L   Y  +L M
Sbjct: 4   HIPMFHVVCQFVFCILAILFMVYDIALLM 32


>AC084156-2|AAK68490.2|  243|Caenorhabditis elegans Hypothetical
           protein Y46E12BL.3 protein.
          Length = 243

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 8/74 (10%)
 Frame = +1

Query: 388 TNNIHHWEMEFDTRQRWENPLMGWTSSGDPLSNVKIQ--FRSPDE------AIEHCEKNG 543
           +   H W++E+  RQR  + ++G  +   PL   +      S +E      A   C    
Sbjct: 65  SRGFHVWQIEWPERQRGTHAVVGVATKNAPLQAAEYTTLVGSNNESYGWNIATRECHYGS 124

Query: 544 WMWYIDVP*NREGF 585
           W W       R+GF
Sbjct: 125 WKWKYPYGNGRDGF 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,626,322
Number of Sequences: 27780
Number of extensions: 359838
Number of successful extensions: 1055
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)