Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18e19
         (615 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.4  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.4  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.4  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.4  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   1.8  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   7.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.6  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -3

Query: 484 WTEDLLRMSSPSEDFPNVDECQIPFPNDGYYLY 386
           W  D+L  +S  E F    +  +   +DG  LY
Sbjct: 69  WKPDILMYNSADEGFDGTYQTSVVVTHDGSCLY 101


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -3

Query: 484 WTEDLLRMSSPSEDFPNVDECQIPFPNDGYYLY 386
           W  D+L  +S  E F    +  +   +DG  LY
Sbjct: 69  WKPDILMYNSADEGFDGTYQTSVVVTHDGSCLY 101


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -3

Query: 484 WTEDLLRMSSPSEDFPNVDECQIPFPNDGYYLY 386
           W  D+L  +S  E F    +  +   +DG  LY
Sbjct: 69  WKPDILMYNSADEGFDGTYQTSVVVTHDGSCLY 101


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -3

Query: 484 WTEDLLRMSSPSEDFPNVDECQIPFPNDGYYLY 386
           W  D+L  +S  E F    +  +   +DG  LY
Sbjct: 69  WKPDILMYNSADEGFDGTYQTSVVVTHDGSCLY 101


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -3

Query: 484 WTEDLLRMSSPSEDFPNVDECQIPFPNDGYYLY 386
           W  D+L  +S  E F    +  +   +DG  LY
Sbjct: 69  WKPDILMYNSADEGFDGTYQTSVVVTHDGSCLY 101


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = -3

Query: 493 F*HWTEDLLRMSSPSE-DFPNVDECQIPFPNDGYYLYHSALHSSQ 362
           F +W   +LRMS PS+ +     + Q P P  G    H  L   Q
Sbjct: 336 FLYWLPCILRMSRPSDKEEREAQKSQKPSPVTGASKSHGDLELRQ 380


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 464 PQEILCPMSKFSSDLLMK 517
           P  I C  SKF  DL+ K
Sbjct: 62  PGHINCDSSKFEEDLMNK 79


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/37 (24%), Positives = 15/37 (40%)
 Frame = +1

Query: 334 KTRRVRIYQPAKNAMQSGTNNIHHWEMEFDTRQRWEN 444
           +  R+R     K    +GT  +   E+ F  +  W N
Sbjct: 86  EAHRIRWESVQKEVTVTGTYQLTETELVFGAKLAWRN 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,717
Number of Sequences: 438
Number of extensions: 3856
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)