Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt18e18
(559 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch... 99 4e-22
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha... 36 0.003
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p... 32 0.066
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ... 27 2.5
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 25 5.7
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 25 5.7
SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa... 25 7.5
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc... 25 7.5
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo... 25 10.0
>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 474
Score = 99.1 bits (236), Expect = 4e-22
Identities = 45/98 (45%), Positives = 64/98 (65%), Gaps = 1/98 (1%)
Frame = +3
Query: 267 HEPDKPNIQT-AIPGPKSQQLLKELNTLQQAGAVQLFADYDKSIGNYFFDADGNAFLDAF 443
+EP P+I+T IPGPK + +E++ AV+ DY+KSIGNY D DGN LD +
Sbjct: 16 NEPQGPSIKTETIPGPKGKAAAEEMSKYHDISAVKFPVDYEKSIGNYLVDLDGNVLLDVY 75
Query: 444 TQISSLPVGYNHPELLSAFEDQHNLKSLINRPALGVFP 557
+QI+++P+GYN+P LL A + L+NRPALG +P
Sbjct: 76 SQIATIPIGYNNPTLLKAAKSDEVATILMNRPALGNYP 113
>SPCC777.09c |arg1||acetylornithine
aminotransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 441
Score = 36.3 bits (80), Expect = 0.003
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 11/80 (13%)
Frame = +3
Query: 339 NTLQQAGA--VQLFADYD----KSIGNYFFDADGNAFLDAFTQISSLPVGYNHPELLSAF 500
N +++ GA + ++A Y K G+Y FD +G ++D + ++ +G+ HPE+
Sbjct: 38 NIIKKEGANIISVYARYPVVAAKGEGSYLFDKEGRKYIDFTSGVAVTSLGHAHPEVARLA 97
Query: 501 EDQ-----HNLKSLINRPAL 545
DQ H+ N PA+
Sbjct: 98 ADQCSKLVHSSNLFYNEPAI 117
>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 438
Score = 31.9 bits (69), Expect = 0.066
Identities = 14/52 (26%), Positives = 29/52 (55%)
Frame = +3
Query: 381 YDKSIGNYFFDADGNAFLDAFTQISSLPVGYNHPELLSAFEDQHNLKSLINR 536
+ K+ G +D +G +LD + S++ G+ HP+++ A +Q +L +R
Sbjct: 35 FSKAKGAKVWDPEGREYLDFLSAYSAVNQGHCHPKIIEALVEQAQRVTLSSR 86
>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 622
Score = 26.6 bits (56), Expect = 2.5
Identities = 10/47 (21%), Positives = 23/47 (48%)
Frame = +3
Query: 264 QHEPDKPNIQTAIPGPKSQQLLKELNTLQQAGAVQLFADYDKSIGNY 404
+H+ + ++QT P P LLK + + ++ + + D + + Y
Sbjct: 93 EHDDSQDSLQTLAPSPSYVPLLKVIGSSEEVNSNLVLTDLETNTDGY 139
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 25.4 bits (53), Expect = 5.7
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 255 SVLQHEPDKPNIQTAIPGPKSQQLLKE 335
SV Q +P PN++ +P P + + L+E
Sbjct: 393 SVSQSQPASPNLRFNMPAPLATRFLQE 419
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 25.4 bits (53), Expect = 5.7
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Frame = -2
Query: 516 DCVDLQMRLIIQDDYTPREVKIFV*-----KHLGMHYHRRQRNNFQYFC 385
+ +D R+I + D + KIF K LG+H R+ +N+++Y C
Sbjct: 773 EAMDKASRVISEADEEAMKNKIFKIEGTQRKILGIHSRRKLKNSYEYEC 821
>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 419
Score = 25.0 bits (52), Expect = 7.5
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -1
Query: 142 KSNL*LGRYLSMQQKFYYSPLSGTVRNNRVRLNITE 35
+ NL RYLS+QQ+ P ++ ++ R I E
Sbjct: 370 EGNLFADRYLSLQQRAMVPPSLPVLKKSKYRAKIKE 405
>SPBC19C2.11c |||mitochondrial outer membrane protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.0 bits (52), Expect = 7.5
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +3
Query: 117 YLPNYKFDLEVQQNLEVRSTKFLILSIKMLLRTSRSA---HVFRGVRAYSVLQHEPDKPN 287
+LP L+VQ + +RS L LS K LL S + ++R +++Q + +
Sbjct: 246 HLPIKMGPLDVQTHPNIRSIASLALSRKALLPISSPSIPMSIYRSTPPDTIIQQLTTQSD 305
Query: 288 IQTAIPGPKSQ 320
+A+ P +Q
Sbjct: 306 DISAVSSPATQ 316
>SPBC11C11.02 |imp2||contractile ring protein
Imp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 670
Score = 24.6 bits (51), Expect = 10.0
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +3
Query: 384 DKSIGNYFFDADGNAFLDAFTQISSLPVGYNHPELLSAFEDQHNLK 521
DKS NYF+ A+ + ++ S V + + EL S + ++ N++
Sbjct: 15 DKSFSNYFWGANDEGYHALLSRFSD--VKHINEELRSFYHERANIE 58
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,117,809
Number of Sequences: 5004
Number of extensions: 41556
Number of successful extensions: 103
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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