Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18e18
         (559 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69664-4|CAA93517.1|  483|Caenorhabditis elegans Hypothetical pr...   126   1e-29
U97405-5|AAB53010.3|  444|Caenorhabditis elegans Hypothetical pr...    35   0.035
Z34802-1|CAA84336.1|  531|Caenorhabditis elegans Hypothetical pr...    32   0.32 
AC084197-25|AAK68591.1|  609|Caenorhabditis elegans Hypothetical...    31   0.74 
U58757-5|AAC47919.3|  555|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AF040645-4|AAB94974.1|  306|Caenorhabditis elegans Hypothetical ...    28   4.0  
Z81116-7|CAB03306.1|  669|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z75710-2|CAB00025.2|  381|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z81482-5|CAB03956.3|  409|Caenorhabditis elegans Hypothetical pr...    27   9.1  
U72211-1|AAB97099.1|  409|Caenorhabditis elegans putative transc...    27   9.1  
AF040641-4|AAB94945.1|  451|Caenorhabditis elegans Hypothetical ...    27   9.1  
AF040641-3|AAT81205.1|  509|Caenorhabditis elegans Hypothetical ...    27   9.1  

>Z69664-4|CAA93517.1|  483|Caenorhabditis elegans Hypothetical
           protein K04D7.3 protein.
          Length = 483

 Score =  126 bits (303), Expect = 1e-29
 Identities = 60/120 (50%), Positives = 84/120 (70%), Gaps = 1/120 (0%)
 Frame = +3

Query: 201 MLLRTSRSAHVFRGVRAYSVLQH-EPDKPNIQTAIPGPKSQQLLKELNTLQQAGAVQLFA 377
           ML R ++S+ + + VR  S + + EP  P+I T+IPGPKS+ L +E++ + Q  +V+   
Sbjct: 1   MLPRLAKSS-LIQQVRGVSAIANAEPSGPSISTSIPGPKSKALKQEMDKVHQTTSVRFHV 59

Query: 378 DYDKSIGNYFFDADGNAFLDAFTQISSLPVGYNHPELLSAFEDQHNLKSLINRPALGVFP 557
           DY+KS GNY  DADGNA LD +TQISSLP+GYNHP+L+      H + SL++RPALG FP
Sbjct: 60  DYEKSFGNYVVDADGNALLDVYTQISSLPLGYNHPDLVKVASQPHLITSLVSRPALGSFP 119


>U97405-5|AAB53010.3|  444|Caenorhabditis elegans Hypothetical
           protein T09B4.8 protein.
          Length = 444

 Score = 35.1 bits (77), Expect = 0.035
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = +3

Query: 321 QLLKELNTLQQAGAVQLFADY---DKSIGNYFFDADGNAFLDAFTQISSLPVGYNHPELL 491
           Q ++ L  L   G V  + D     K    + FD++G  +LD F  I ++ VG+ HP++ 
Sbjct: 2   QRVQALRPLLPKGHVTYYKDQLLITKGEKQFLFDSNGKKYLDFFGGIVTVSVGHCHPKIN 61

Query: 492 SAFEDQ 509
           +A  +Q
Sbjct: 62  AALTEQ 67


>Z34802-1|CAA84336.1|  531|Caenorhabditis elegans Hypothetical
           protein M88.1 protein.
          Length = 531

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = +3

Query: 111 LRYLPNYKFDLEVQQNLEVRSTKFLILSI-KMLLRTSRSAHVFR 239
           L +LP+YK D+++ +N++V   +  +  + K LL   +SA +F+
Sbjct: 53  LSHLPDYKTDVKIPKNIKVHRVEAYVEGLTKALLEKEQSAFIFK 96


>AC084197-25|AAK68591.1|  609|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.19 protein.
          Length = 609

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 381 YDKSIGNYFFDADGNAFLDAFTQISSLPVGYNHPELLSAFEDQ 509
           YD+  G YFFD D + F    T   +  + Y   E L A++++
Sbjct: 81  YDEDTGEYFFDRDPDIFRHILTFYRTGKLHYPRHECLVAYDEE 123


>U58757-5|AAC47919.3|  555|Caenorhabditis elegans Hypothetical
           protein C01B10.9 protein.
          Length = 555

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 360 AVQLFADYDKSIGNYFFDADGNAFLDAF 443
           A  LF +    +GNYFFDAD     D F
Sbjct: 76  ATGLFEEEHGIVGNYFFDADTKKAFDYF 103


>U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical
           protein C18H2.1 protein.
          Length = 1770

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 417 DGNAFLDAFTQISSLPVGYNHPELLSAFEDQHNLKSLI 530
           D  A    FTQ+ ++P   +  E + A E  +NLKSL+
Sbjct: 459 DTAALQSLFTQLKAMPSQSDDSESIKAIEKLNNLKSLL 496


>AF040645-4|AAB94974.1|  306|Caenorhabditis elegans Hypothetical
           protein F52C6.8 protein.
          Length = 306

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -2

Query: 402 NFQYFCHNQQKAELLPLAVEC*VLSAAAATWARESLFEY 286
           N Q++     K E + + + C +L  A ATW  ++ FE+
Sbjct: 35  NVQWYMAVSHKKEDMAVYLHCNILGKAEATWCIDAEFEF 73


>Z81116-7|CAB03306.1|  669|Caenorhabditis elegans Hypothetical
           protein T06C12.8 protein.
          Length = 669

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 381 YDKSIGNY-FFDADGNAFLDAFTQISSL 461
           Y+ S G Y FFD +G ++L  F+Q++ L
Sbjct: 573 YNISTGTYRFFDTNGFSYLSVFSQLTPL 600


>Z75710-2|CAB00025.2|  381|Caenorhabditis elegans Hypothetical
           protein D1081.4 protein.
          Length = 381

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 208 NNILILRIKNFVDRTSRFCCTSKSNL 131
           N++ +L + N  D+    CC SKSN+
Sbjct: 126 NSVPVLLVANKTDKPCLSCCASKSNM 151


>Z81482-5|CAB03956.3|  409|Caenorhabditis elegans Hypothetical
           protein C40H5.5 protein.
          Length = 409

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 207 LRTSRSAHVFRGVRAYSVLQHEPDKPNIQ 293
           +RTS   H  R ++ Y  L H PD  +++
Sbjct: 295 MRTSFKHHQLRAMKTYFALNHNPDAKDLK 323


>U72211-1|AAB97099.1|  409|Caenorhabditis elegans putative
           transcription factor TTX-3 protein.
          Length = 409

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 207 LRTSRSAHVFRGVRAYSVLQHEPDKPNIQ 293
           +RTS   H  R ++ Y  L H PD  +++
Sbjct: 295 MRTSFKHHQLRAMKTYFALNHNPDAKDLK 323


>AF040641-4|AAB94945.1|  451|Caenorhabditis elegans Hypothetical
           protein D1069.3a protein.
          Length = 451

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 243 VRAYSVLQHEPDKPNIQTAIPGPKSQQLLKELNTLQ 350
           +R +SV  H+P K  +QT +P  ++  +   LNTL+
Sbjct: 140 IRHHSVY-HDPAKIQVQTDVPVMRNASITPVLNTLR 174


>AF040641-3|AAT81205.1|  509|Caenorhabditis elegans Hypothetical
           protein D1069.3b protein.
          Length = 509

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 243 VRAYSVLQHEPDKPNIQTAIPGPKSQQLLKELNTLQ 350
           +R +SV  H+P K  +QT +P  ++  +   LNTL+
Sbjct: 140 IRHHSVY-HDPAKIQVQTDVPVMRNASITPVLNTLR 174


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,542,631
Number of Sequences: 27780
Number of extensions: 226773
Number of successful extensions: 544
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)