Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18e09
         (624 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0207 - 41993659-41994849                                         31   0.56 
03_06_0205 - 32347636-32347646,32347762-32347801,32347959-323480...    31   0.98 
11_01_0533 + 4214900-4215162,4215986-4219043,4219613-4221539,422...    29   2.3  
07_01_0319 + 2245724-2245753,2246797-2246976,2247547-2247630           29   3.0  
06_03_0651 - 23164377-23165969                                         29   4.0  
07_03_0361 + 17215312-17216217                                         28   6.9  
03_02_0805 + 11382631-11384747,11385012-11385095,11385181-11385376     27   9.2  

>01_07_0207 - 41993659-41994849
          Length = 396

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = +2

Query: 230 LYVVDVRGTTKDGRKEMSLFVKQIIHNAE---RISIYSVEDIFAREALAYRELCPVFEDL 400
           +Y +D  G  ++  +E + F+   +H A     I IY+ +D++AR AL          D 
Sbjct: 7   VYELDHGGEGEEEEEEDACFLDIYVHGARGIHNICIYAAQDVYARLALTSSPDDAPALDT 66

Query: 401 QIEAGIPENERF 436
           ++ AG   N RF
Sbjct: 67  RVAAGGGANPRF 78


>03_06_0205 -
           32347636-32347646,32347762-32347801,32347959-32348060,
           32348473-32348599,32348893-32350835,32351347-32351367
          Length = 747

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +2

Query: 245 VRGTTKDGRKEMSLFVKQIIHNAERISIY-SVEDIFAREALAYRELCPVFEDLQIEAGI 418
           +RG   D  K++     Q+   ++ +SI  S ED   R+    +E    +EDLQIEAG+
Sbjct: 421 LRGLLADNMKDVKELSSQLSEASKEMSIQLSSEDDLLRQIAKIKE---EYEDLQIEAGV 476


>11_01_0533 + 4214900-4215162,4215986-4219043,4219613-4221539,
            4221561-4222094,4222388-4222842,4223073-4223189,
            4223319-4223477
          Length = 2170

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 21/80 (26%), Positives = 40/80 (50%)
 Frame = +2

Query: 128  VKESIQKIIQRENFVSHDVETKKIYPDGSGFMGDLYVVDVRGTTKDGRKEMSLFVKQIIH 307
            +  SI  + Q     S D+E  K YP+ S +  D  V+ V G+ K   + ++L++  +I 
Sbjct: 1017 ISASIDMMKQDSAPTSLDIEVWKPYPENSLYNYDKDVLGVSGSGKVLEETVALWLLSLIC 1076

Query: 308  NAERISIYSVEDIFAREALA 367
            ++   S  +V D+   E ++
Sbjct: 1077 SSHLSSKLTVMDLGGVETIS 1096


>07_01_0319 + 2245724-2245753,2246797-2246976,2247547-2247630
          Length = 97

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -3

Query: 451 FFYHFKSLVFRYSSFDLKIFEN-RTELSISQCFSCKDI 341
           F YH  S+V  YS  +++IF++ +  L +S  F  K +
Sbjct: 3   FLYHENSIVIEYSDVNMEIFQSIQKHLQVSMEFVMKSV 40


>06_03_0651 - 23164377-23165969
          Length = 530

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +2

Query: 179 DVETKKIYPDGSGFMGDLYVVDVRGTTKDGRKEMSLFVKQIIHNAERISIYS 334
           D++  K+ PDG  F+G L      G   +GRK+    ++++     R+  YS
Sbjct: 372 DMQRSKVKPDGVTFIGVLSACCHGGLVDEGRKQFHA-MREVYQIEPRVEHYS 422


>07_03_0361 + 17215312-17216217
          Length = 301

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = +2

Query: 107 AQELPIKVKESIQKIIQRENFVSHDVETKKIYP---DGSGFMGDLYVVDVRGTTKDGRKE 277
           A+EL   ++ + ++++  E   SH V + +IYP   + S   GD+  + V G   D  +E
Sbjct: 80  AEELDGALRAAKERLVVVEFAASHSVNSSRIYPCMVELSRTCGDVDFLLVMGDESDATRE 139

Query: 278 M 280
           +
Sbjct: 140 L 140


>03_02_0805 + 11382631-11384747,11385012-11385095,11385181-11385376
          Length = 798

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
 Frame = +2

Query: 170 VSHDVETKKIYPDGSGFMGDLYVVDVRGTTKDGRKEM-SLFVKQIIH-NAERISIYSVED 343
           + HD+    + PDG  ++G L      G  K+GR+   S+ V   I   AE  S   + D
Sbjct: 421 IFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYS--CMVD 478

Query: 344 IFAREALAYRELCPVFEDLQIE 409
           +  R  L   E   + +++ +E
Sbjct: 479 LLGRSGLV-EEAFDLIKNMPVE 499


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,447,979
Number of Sequences: 37544
Number of extensions: 301681
Number of successful extensions: 800
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)