Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt18e09
(624 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U82936-1|AAB40869.1| 682|Caenorhabditis elegans protein kinase ... 33 0.17
U82935-1|AAB40868.1| 680|Caenorhabditis elegans protein kinase ... 33 0.17
U29376-5|AAA68709.2| 936|Caenorhabditis elegans Protein kinase ... 33 0.17
U29376-4|AAM51504.1| 682|Caenorhabditis elegans Protein kinase ... 33 0.17
U29376-3|AAM51503.1| 680|Caenorhabditis elegans Protein kinase ... 33 0.17
Z77659-5|CAB01168.1| 953|Caenorhabditis elegans Hypothetical pr... 31 0.51
AL031632-5|CAE11314.1| 324|Caenorhabditis elegans Hypothetical ... 31 0.51
Z81492-2|CAB04027.1| 458|Caenorhabditis elegans Hypothetical pr... 30 1.5
AF025457-4|AAB70966.1| 385|Caenorhabditis elegans Hypothetical ... 29 2.0
AC025716-1|AAK39606.1| 788|Caenorhabditis elegans Hypothetical ... 29 2.0
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr... 29 2.7
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein... 29 2.7
Z81015-4|CAB02658.2| 1170|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z71181-3|CAA94896.1| 493|Caenorhabditis elegans Hypothetical pr... 28 4.7
AC006680-9|AAK72299.1| 353|Caenorhabditis elegans Hypothetical ... 28 6.2
Z81594-2|CAB04746.1| 416|Caenorhabditis elegans Hypothetical pr... 27 8.2
U40802-3|AAM81105.1| 369|Caenorhabditis elegans Dense body prot... 27 8.2
U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body prot... 27 8.2
J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein ( C.ele... 27 8.2
AL110478-4|CAB54346.1| 546|Caenorhabditis elegans Hypothetical ... 27 8.2
AC006757-2|AAF60543.1| 416|Caenorhabditis elegans Hypothetical ... 27 8.2
>U82936-1|AAB40869.1| 682|Caenorhabditis elegans protein kinase C2
B isoform protein.
Length = 682
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -3
Query: 454 LFFYHFKSLVFRYSSFDLKIFENRTELSISQCFSCKD-IFDRINTYTFC 311
LFF H K +++R D + E + I+ CK+ IF T TFC
Sbjct: 460 LFFLHSKGIIYRDLKLDNVMLERDGHIKITDFGMCKENIFGDATTKTFC 508
>U82935-1|AAB40868.1| 680|Caenorhabditis elegans protein kinase C2
A isoform protein.
Length = 680
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -3
Query: 454 LFFYHFKSLVFRYSSFDLKIFENRTELSISQCFSCKD-IFDRINTYTFC 311
LFF H K +++R D + E + I+ CK+ IF T TFC
Sbjct: 460 LFFLHSKGIIYRDLKLDNVMLERDGHIKITDFGMCKENIFGDATTKTFC 508
>U29376-5|AAA68709.2| 936|Caenorhabditis elegans Protein kinase c
protein 2, isoformc protein.
Length = 936
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -3
Query: 454 LFFYHFKSLVFRYSSFDLKIFENRTELSISQCFSCKD-IFDRINTYTFC 311
LFF H K +++R D + E + I+ CK+ IF T TFC
Sbjct: 600 LFFLHSKGIIYRDLKLDNVMLERDGHIKITDFGMCKENIFGDATTKTFC 648
>U29376-4|AAM51504.1| 682|Caenorhabditis elegans Protein kinase c
protein 2, isoformb protein.
Length = 682
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -3
Query: 454 LFFYHFKSLVFRYSSFDLKIFENRTELSISQCFSCKD-IFDRINTYTFC 311
LFF H K +++R D + E + I+ CK+ IF T TFC
Sbjct: 460 LFFLHSKGIIYRDLKLDNVMLERDGHIKITDFGMCKENIFGDATTKTFC 508
>U29376-3|AAM51503.1| 680|Caenorhabditis elegans Protein kinase c
protein 2, isoforma protein.
Length = 680
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -3
Query: 454 LFFYHFKSLVFRYSSFDLKIFENRTELSISQCFSCKD-IFDRINTYTFC 311
LFF H K +++R D + E + I+ CK+ IF T TFC
Sbjct: 460 LFFLHSKGIIYRDLKLDNVMLERDGHIKITDFGMCKENIFGDATTKTFC 508
>Z77659-5|CAB01168.1| 953|Caenorhabditis elegans Hypothetical
protein F23B12.7 protein.
Length = 953
Score = 31.5 bits (68), Expect = 0.51
Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 7/105 (6%)
Frame = +2
Query: 140 IQKIIQR-ENFVSHD---VETKKIYPDGSGFMGDLYVVDVRGTTKDGRKEMSLFV-KQII 304
IQK+++ ++ ++ D ++TK+ +GS LY V +GT D R M L + K +
Sbjct: 123 IQKLLEEGKDEMAQDAALLQTKEKQDNGSEASW-LYSVISKGTATDKRTAMQLQMHKSPV 181
Query: 305 HNAERIS--IYSVEDIFAREALAYRELCPVFEDLQIEAGIPENER 433
H+ E I I S + R+ + ++ P+ ED+ I +PEN +
Sbjct: 182 HSLEYIEKLIASCKKQGTRDVV---DIIPILEDVFINHCLPENRK 223
>AL031632-5|CAE11314.1| 324|Caenorhabditis elegans Hypothetical
protein Y32B12B.7 protein.
Length = 324
Score = 31.5 bits (68), Expect = 0.51
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -3
Query: 346 DIFDRINTYTFCIVYNLLNKQTHFFAAVFCCSSDIYNI*VAHK 218
+ FD INT ++ + Y L+ Q H F C+ I+ VA K
Sbjct: 272 EFFDLINTISYIVHYISLDAQAHVITWYFYCTHPIFKKKVARK 314
>Z81492-2|CAB04027.1| 458|Caenorhabditis elegans Hypothetical
protein E03H4.5 protein.
Length = 458
Score = 29.9 bits (64), Expect = 1.5
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = -3
Query: 532 HYVHSVVRFIAFLTNIL*NDN-VFCTFLF-FYHFKSLVFRYSSFDLKIFENRTELSISQC 359
+ V+SVV I L N L ++ + +F FYHF + +RY S L+IF +S +
Sbjct: 21 YLVNSVVEQIQQLANFLESEKKIDASFAIKFYHFAYVDYRYDSPRLRIFALNPCIS-KKN 79
Query: 358 FSCKDIF 338
F DIF
Sbjct: 80 FLSVDIF 86
>AF025457-4|AAB70966.1| 385|Caenorhabditis elegans Hypothetical
protein C08E3.6 protein.
Length = 385
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/83 (20%), Positives = 41/83 (49%)
Frame = +2
Query: 143 QKIIQRENFVSHDVETKKIYPDGSGFMGDLYVVDVRGTTKDGRKEMSLFVKQIIHNAERI 322
QK++ N++ + K+ + +L+ +D +G K RK+ +++ +++A+ +
Sbjct: 164 QKVVAGGNYIELCNKDLKLMVESGKAQMELFRLDNKGIQKKSRKKFIAGIEKALNSAKNL 223
Query: 323 SIYSVEDIFAREALAYRELCPVF 391
S +V+ F +L P+F
Sbjct: 224 SSKTVQTQFVSYP-ELAQLLPIF 245
>AC025716-1|AAK39606.1| 788|Caenorhabditis elegans Hypothetical
protein Y39G10AR.11 protein.
Length = 788
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -3
Query: 607 LLFQNQ*ETMESRQFFDSQFRKFRR 533
+LFQ+ ETM+ R+ FD + R+ RR
Sbjct: 365 MLFQSTKETMDKREIFDEESRECRR 389
>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/30 (40%), Positives = 23/30 (76%)
Frame = +2
Query: 98 NKMAQELPIKVKESIQKIIQRENFVSHDVE 187
++++QE+ IK K+S +K+I+R N + D+E
Sbjct: 1061 DEISQEIVIKTKDSTEKLIKRWNQLELDLE 1090
>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/30 (40%), Positives = 23/30 (76%)
Frame = +2
Query: 98 NKMAQELPIKVKESIQKIIQRENFVSHDVE 187
++++QE+ IK K+S +K+I+R N + D+E
Sbjct: 1061 DEISQEIVIKTKDSTEKLIKRWNQLELDLE 1090
>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
protein.
Length = 3674
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/30 (40%), Positives = 23/30 (76%)
Frame = +2
Query: 98 NKMAQELPIKVKESIQKIIQRENFVSHDVE 187
++++QE+ IK K+S +K+I+R N + D+E
Sbjct: 1061 DEISQEIVIKTKDSTEKLIKRWNQLELDLE 1090
>Z81015-4|CAB02658.2| 1170|Caenorhabditis elegans Hypothetical protein
C11E4.6 protein.
Length = 1170
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = -3
Query: 454 LFFYHFKSLVFRYSSFDLKIF-ENRTELSISQCFSCKDIFDRINTYTFCIV 305
+F FK+L+ Y + +++ ++R +L+ CF +D +R +TFC++
Sbjct: 1073 IFDETFKTLLDGYGVYTIRVVCQDRKDLNFF-CFVARDTENRFFCHTFCVL 1122
>Z71181-3|CAA94896.1| 493|Caenorhabditis elegans Hypothetical
protein K07C5.3 protein.
Length = 493
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 159 EKTLYLTMLKQRKYIQMDLDLWATYML*MSEEQ 257
EK+ +T L Q+K DL LW T+++ S+++
Sbjct: 184 EKSAVITSLLQKKNFDGDLMLWLTFLIRESDQR 216
>AC006680-9|AAK72299.1| 353|Caenorhabditis elegans Hypothetical
protein R13D7.2 protein.
Length = 353
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 329 YSVEDIFAREALAYRELCPVFEDLQIEAGIPENERFKMVKKQECTKD 469
Y++ED+ A A +C + E E ++FK + +Q+C KD
Sbjct: 59 YNLEDVTADIAKNMSYVCDRITNCFDEIPCDEAQKFKRIYEQKCEKD 105
>Z81594-2|CAB04746.1| 416|Caenorhabditis elegans Hypothetical
protein T20F10.4 protein.
Length = 416
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/50 (30%), Positives = 30/50 (60%)
Frame = -3
Query: 454 LFFYHFKSLVFRYSSFDLKIFENRTELSISQCFSCKDIFDRINTYTFCIV 305
+++Y++ LVF S + +I ++R +++I FS K I +T +C+V
Sbjct: 352 VYYYYYPLLVFDVSKQNDRIIQSRPDVTIKAMFS-KSIAS--STKCYCLV 398
>U40802-3|AAM81105.1| 369|Caenorhabditis elegans Dense body protein
1, isoform b protein.
Length = 369
Score = 27.5 bits (58), Expect = 8.2
Identities = 19/85 (22%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Frame = +2
Query: 122 IKVKESIQKIIQRENFVSHDVETKKIYPDGSGFMGDLYVVDVRGTTKDGRKEMSLFVKQI 301
IK++ ++ ++ +R ++ + K + + +G V+ G +G +E ++Q+
Sbjct: 268 IKMRTALLQVSERIPTIA--TQLKVLSTVKATMLGSANVIGPYGQPVEGSEEDDEAMQQL 325
Query: 302 IHNAERISIYSVEDIF-AREALAYR 373
+HNA+ + + SV+D+ A EA + +
Sbjct: 326 VHNAQNL-MQSVKDVVRAAEAASIK 349
>U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body protein
1, isoform a protein.
Length = 1010
Score = 27.5 bits (58), Expect = 8.2
Identities = 19/85 (22%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Frame = +2
Query: 122 IKVKESIQKIIQRENFVSHDVETKKIYPDGSGFMGDLYVVDVRGTTKDGRKEMSLFVKQI 301
IK++ ++ ++ +R ++ + K + + +G V+ G +G +E ++Q+
Sbjct: 909 IKMRTALLQVSERIPTIA--TQLKVLSTVKATMLGSANVIGPYGQPVEGSEEDDEAMQQL 966
Query: 302 IHNAERISIYSVEDIF-AREALAYR 373
+HNA+ + + SV+D+ A EA + +
Sbjct: 967 VHNAQNL-MQSVKDVVRAAEAASIK 990
>J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein ( C.elegans
vinculin (deb-1) gene, complete cds. ).
Length = 1010
Score = 27.5 bits (58), Expect = 8.2
Identities = 19/85 (22%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Frame = +2
Query: 122 IKVKESIQKIIQRENFVSHDVETKKIYPDGSGFMGDLYVVDVRGTTKDGRKEMSLFVKQI 301
IK++ ++ ++ +R ++ + K + + +G V+ G +G +E ++Q+
Sbjct: 909 IKMRTALLQVSERIPTIA--TQLKVLSTVKATMLGSANVIGPYGQPVEGSEEDDEAMQQL 966
Query: 302 IHNAERISIYSVEDIF-AREALAYR 373
+HNA+ + + SV+D+ A EA + +
Sbjct: 967 VHNAQNL-MQSVKDVVRAAEAASIK 990
>AL110478-4|CAB54346.1| 546|Caenorhabditis elegans Hypothetical
protein Y26D4A.10 protein.
Length = 546
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/50 (30%), Positives = 30/50 (60%)
Frame = -3
Query: 454 LFFYHFKSLVFRYSSFDLKIFENRTELSISQCFSCKDIFDRINTYTFCIV 305
+++Y++ LVF S + +I ++R +++I FS K I +T +C+V
Sbjct: 352 VYYYYYPLLVFDVSKQNDRIIQSRPDVTIKATFS-KSIAS--STKCYCLV 398
>AC006757-2|AAF60543.1| 416|Caenorhabditis elegans Hypothetical
protein Y40C7B.3 protein.
Length = 416
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/50 (30%), Positives = 30/50 (60%)
Frame = -3
Query: 454 LFFYHFKSLVFRYSSFDLKIFENRTELSISQCFSCKDIFDRINTYTFCIV 305
+++Y++ LVF S + +I ++R +++I FS K I +T +C+V
Sbjct: 352 VYYYYYPLLVFDVSKQNDRIIQSRPDVTIKAMFS-KSIAS--STKCYCLV 398
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,531,708
Number of Sequences: 27780
Number of extensions: 312683
Number of successful extensions: 1027
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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