Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18e09
         (624 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    27   0.15 
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              22   4.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.6  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   7.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.4  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   9.8  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   9.8  

>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -3

Query: 454 LFFYHFKSLVFRYSSFDLKIFENRTELSISQCFSCKD-IFDRINTYTFC 311
           LFF H + +V+R    D  + +    + I+    CK+ I     T TFC
Sbjct: 98  LFFLHGRGIVYRDLKLDNVLLDQDGHIKIADFGMCKEGISGDKTTKTFC 146


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -1

Query: 306 CIICLTNKLISLRPSFVVPLTSTTYKSPIN 217
           C+IC  +     RPSFV      T  S +N
Sbjct: 13  CLICSPSVHCGTRPSFVSDEMIATAASVVN 42


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 333 RSKISLQEKHWLIESSVRFSKIFKSKLEY 419
           R  IS   KH+ I+SSV  SK+  S   Y
Sbjct: 256 RIVISESLKHFTIQSSVTTSKMMVSPRLY 284


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 297 CLTNKLISLRPSFVVPLTSTTYKSPI 220
           C+TN +   RPS     +ST+ KS I
Sbjct: 261 CVTNSVTCDRPSDEAEPSSTSKKSGI 286


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 514 LQNGRSVSEICGIGYQRIGEIPWSLIGF 597
           LQ G +VS  C        ++ W+L GF
Sbjct: 433 LQPGPAVSLKCSAAGNPTPQVTWALDGF 460


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 514 LQNGRSVSEICGIGYQRIGEIPWSLIGF 597
           LQ G +VS  C        ++ W+L GF
Sbjct: 433 LQPGPAVSLKCSAAGNPTPQVTWALDGF 460


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 407 RFEDLRKPDRALYK 366
           R+EDLR  DR  Y+
Sbjct: 233 RYEDLRHEDRNSYR 246


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 364 QCFSCKDIFDRINTY 320
           QC  C+  FD+ N Y
Sbjct: 63  QCLLCQKAFDQKNLY 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,089
Number of Sequences: 438
Number of extensions: 4208
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)