Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18e07
         (305 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    27   0.16 
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ...    24   1.5  
AY943929-1|AAX49502.1|  755|Anopheles gambiae laccase-2 isoform ...    22   6.0  

>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = +2

Query: 137 QNGSRLSPEKQEMTFISQLRTP----LIDTGHLCLPCSRLLK 250
           Q+   L+P K EMT IS L+ P     ID     +P SR +K
Sbjct: 710 QHHLELAPAKTEMTIISSLKHPPSHISIDVRGTAVPYSRSIK 751


>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 1222

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 137 QNGSRLSPEKQEMTFISQLRTP 202
           Q+G  L+P K E   IS  +TP
Sbjct: 751 QHGLELAPAKTEAVLISSKKTP 772


>AY943929-1|AAX49502.1|  755|Anopheles gambiae laccase-2 isoform B
           protein.
          Length = 755

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 162 SGDNRDPFCTRDC*ESESKILRPLN 88
           +GDNR P C  +C     K+  PLN
Sbjct: 596 NGDNRPPDCGPNC-MCTHKVDIPLN 619


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 316,447
Number of Sequences: 2352
Number of extensions: 5655
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 563,979
effective HSP length: 55
effective length of database: 434,619
effective search space used: 19992474
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)