Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18e07
         (305 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   1.5  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   2.6  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   3.4  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 118 FLAITCAEWISIVARETRDDFYKPAKN 198
           FLAI    W + ++R  R ++Y    N
Sbjct: 435 FLAINVFYWFAYLSRSERINYYNVNSN 461


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 7/23 (30%), Positives = 11/23 (47%)
 Frame = -3

Query: 300 FLNGFKRGIFITMFRPHFSSREH 232
           ++N F   +  T+F P F    H
Sbjct: 667 YMNSFVNPVIYTVFNPEFRKAFH 689



 Score = 21.0 bits (42), Expect = 3.4
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +1

Query: 52  VFKSCKNKARKA 87
           +FK+ +N+ARKA
Sbjct: 366 IFKALRNRARKA 377


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +1

Query: 100 EYLTFAFLAITCAEWISI 153
           +YL F  + +T + WI++
Sbjct: 314 KYLLFTMILVTLSIWITV 331


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,695
Number of Sequences: 438
Number of extensions: 1445
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6493812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)