Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt18e06
(342 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0150 + 27025208-27025663 29 0.72
10_05_0113 + 9280756-9283489,9283726-9284048,9284201-9284314 28 1.7
01_06_0886 + 32725504-32725824,32725905-32726658,32727911-327280... 27 2.9
05_06_0085 + 25441460-25443504,25444263-25444536,25445091-25445468 27 3.9
09_04_0037 + 13992103-13992624,13993001-13993180,13993423-139936... 27 5.1
01_01_1084 - 8521796-8522389,8522503-8522983,8523084-8523190 27 5.1
07_03_0394 - 17633753-17636788 26 6.7
03_01_0107 + 849489-850652,850745-850835,850926-851083,851180-85... 26 6.7
11_01_0451 + 3499084-3501757,3501907-3502275,3502358-3502389 26 8.9
02_05_0587 + 30162806-30163183,30163315-30163478,30163571-301636... 26 8.9
>01_06_0150 + 27025208-27025663
Length = 151
Score = 29.5 bits (63), Expect = 0.72
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +1
Query: 25 TAVVFVTIAFFIHFSLFKLVFTMPKVVKSAGREIILKAK 141
T ++F+T++FF FSL +F K+ A R +++ K
Sbjct: 2 TLLLFLTLSFFSFFSLSLCIFINEKLRTGASRSMVVPKK 40
>10_05_0113 + 9280756-9283489,9283726-9284048,9284201-9284314
Length = 1056
Score = 28.3 bits (60), Expect = 1.7
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -2
Query: 311 SLKFHHHHQQPTVVHSKMVKIT*LVSQLSTCH-GHYSLTNIV 189
+L++ HHH P++ H + L+ + T H G +SL I+
Sbjct: 844 ALEYLHHHISPSIAHCDIKPSNVLLDKDMTAHIGDFSLARIM 885
>01_06_0886 +
32725504-32725824,32725905-32726658,32727911-32728033,
32729477-32729535,32731427-32731732,32732006-32732236,
32732332-32732484,32732567-32732836
Length = 738
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -1
Query: 258 GKNHITGIPTKYLSWPLLS-YEHCLLISKPPDSSVLLHK 145
G N I + LSWPL S Y C+ +P +S+ +K
Sbjct: 370 GPNGSDPIADRQLSWPLASKYSWCIYKRRPDESAASANK 408
>05_06_0085 + 25441460-25443504,25444263-25444536,25445091-25445468
Length = 898
Score = 27.1 bits (57), Expect = 3.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 178 KTP*FFCSASQNPSPSILFLDQHF 107
KTP F C+ Q PS + +LD F
Sbjct: 826 KTPLFACTVGQKPSKARFYLDDTF 849
>09_04_0037 +
13992103-13992624,13993001-13993180,13993423-13993691,
13994120-13995773
Length = 874
Score = 26.6 bits (56), Expect = 5.1
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +1
Query: 1 GYQVLLSSTAVVFVTIAFFIHFSL 72
GY V++++TA+ F+T FF+ +L
Sbjct: 739 GYAVVIATTALFFLTCGFFLKRTL 762
>01_01_1084 - 8521796-8522389,8522503-8522983,8523084-8523190
Length = 393
Score = 26.6 bits (56), Expect = 5.1
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 299 HHHHQQPTVVHSKM 258
HHHH P V HS+M
Sbjct: 296 HHHHLLPLVFHSRM 309
>07_03_0394 - 17633753-17636788
Length = 1011
Score = 26.2 bits (55), Expect = 6.7
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +1
Query: 82 VFTMPK-VVKSAGREIILKAKDFVKQN 159
VF P+ V++S E+I+K KDF++ +
Sbjct: 325 VFAFPREVMQSTSLEVIVKDKDFIRDD 351
>03_01_0107 +
849489-850652,850745-850835,850926-851083,851180-851231,
852373-852452,852540-852633,852711-853231,854087-854202,
854242-854293
Length = 775
Score = 26.2 bits (55), Expect = 6.7
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 257 PFYCGLLWAVDDDDEISMTNKII 325
PF C L+ VDD DE S K +
Sbjct: 175 PFICELMRRVDDSDESSAVEKAL 197
>11_01_0451 + 3499084-3501757,3501907-3502275,3502358-3502389
Length = 1024
Score = 25.8 bits (54), Expect = 8.9
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -2
Query: 311 SLKFHHHHQQPTVVHSKMVKIT*LVSQLSTCH-GHYSLTNI 192
+L++ HH+ Q T+VH + L+ T H G + L +
Sbjct: 824 ALEYLHHNNQGTIVHCDLKPSNILLDDNMTAHVGDFGLARL 864
>02_05_0587 +
30162806-30163183,30163315-30163478,30163571-30163654,
30163737-30163794,30164092-30164145,30164244-30164309,
30164310-30164381,30164547-30164627,30165361-30165533,
30165916-30166018,30166148-30166279,30166432-30166554,
30166898-30167002,30167397-30167722,30167919-30168258,
30169973-30170113,30170589-30170801,30170901-30171119,
30171272-30171619,30171711-30172043,30172548-30172601
Length = 1188
Score = 25.8 bits (54), Expect = 8.9
Identities = 9/34 (26%), Positives = 15/34 (44%)
Frame = -1
Query: 261 NGKNHITGIPTKYLSWPLLSYEHCLLISKPPDSS 160
NG + P + WP+ + L+ PP+ S
Sbjct: 373 NGLSEFESFPLRVTGWPVELMAYAFLVVSPPEMS 406
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,553,926
Number of Sequences: 37544
Number of extensions: 127972
Number of successful extensions: 400
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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