Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18e04
         (537 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L04753-1|AAA29357.1|  511|Anopheles gambiae alpha-amylase protein.     31   0.032
AY505417-1|AAR90328.1|  206|Anopheles gambiae superoxide dismuta...    26   0.92 
M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    24   2.8  

>L04753-1|AAA29357.1|  511|Anopheles gambiae alpha-amylase protein.
          Length = 511

 Score = 30.7 bits (66), Expect = 0.032
 Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
 Frame = -2

Query: 434 LNRNGMTAPTKPLIVLLSIMRVPL*FSVMS**LLKKPVNWKPSNPNIAINTI-TATLVRS 258
           +N  G T P +P I   S   +P      +      P  W   NP  AIN    A  +R+
Sbjct: 123 INHMGATQPVEPAIGTGSSTAIPSDRQFPA-----VPFGWPDFNPPCAINDWGNAEQIRN 177

Query: 257 CVKLGRIDKPIMIPXAPKVLIIFLRHVV 174
           C  +G  D    +P     ++ FL H++
Sbjct: 178 CELVGLHDLNQAVPWVRDRVVDFLNHLI 205


>AY505417-1|AAR90328.1|  206|Anopheles gambiae superoxide dismutase
           1 protein.
          Length = 206

 Score = 25.8 bits (54), Expect = 0.92
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 168 NIVYDFGASHPLYCRXSR*VNQPHCQK*HHS 76
           ++ YDFGA  P+ CR    + + H QK HH+
Sbjct: 38  DLPYDFGALEPVICRE---IMELHHQK-HHN 64


>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 24.2 bits (50), Expect = 2.8
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 324 RFFE*LSRHDRKLQXDPHNAKQHYQRLRRSCHPIPIQLFLVXR 452
           RF    SR   + + DP +  Q + R+RR C+ +P ++ L  R
Sbjct: 380 RFEAYSSRLQSRFRSDPASFWQ-FVRIRRGCNTLPNEMVLDSR 421


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 454,655
Number of Sequences: 2352
Number of extensions: 7317
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 49897362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)