Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt18d24
(520 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces... 151 6e-38
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 26 2.9
SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces po... 26 2.9
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc... 26 3.9
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos... 26 3.9
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 26 3.9
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 25 5.1
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe... 25 5.1
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 25 5.1
>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 151 bits (366), Expect = 6e-38
Identities = 77/132 (58%), Positives = 93/132 (70%), Gaps = 3/132 (2%)
Frame = +2
Query: 134 KAVCVLRGD--VSGTVFFDQQDEKSPVVVSGEVQGL-TKGKHGFHVHEFGDNTNGCTSAG 304
+AV VLRGD VSG V F+Q D+ S V V ++ G K GFH+H+FGDNTNGCTSAG
Sbjct: 3 RAVAVLRGDSKVSGVVTFEQVDQNSQVSVIVDLVGNDANAKRGFHIHQFGDNTNGCTSAG 62
Query: 305 AHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVH 484
HFNPE + HG ++AVRHVGDLGN+E+ + G K + DS ISL G NSIIGRT+V+H
Sbjct: 63 PHFNPEGKTHGDRTAAVRHVGDLGNLES-DAQGNIKTTFSDSVISLFGANSIIGRTIVIH 121
Query: 485 ADPDDLGLGGHE 520
A DDLG G E
Sbjct: 122 AGEDDLGKGTSE 133
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 26.2 bits (55), Expect = 2.9
Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 3/103 (2%)
Frame = +3
Query: 174 FSSISRMKSHLLLFLERSRA*LRVNTVSMCTNLVTTQTVAHQLELISTLKNKIMVVPVLL 353
FSS+S + F S + N S + TT ++ + T + I+ P++
Sbjct: 508 FSSLSSSQLSTENFTSASSSLSLTNAKSSLSTPSTTIPTSNSSVSLQTSSSLIISSPIIS 567
Query: 354 YAMSATSVTLRQLK---TLESLKYQSKIPRSLFMDLTASLVAL 473
+++ATS + L T + Y S + S D ++SL+ +
Sbjct: 568 SSLTATSTSTPALTHSITPSNTSYTSSLIPSSSTDYSSSLITV 610
>SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 213
Score = 26.2 bits (55), Expect = 2.9
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -1
Query: 292 ATVCVVTKFVHMETVFTLSQ-ALDLSRNNNR*LFILLIEENSSANIT 155
A +C+ + VH++ V +LS+ +S N N+ L +LLI S+ T
Sbjct: 144 AGLCIGDELVHVQNVTSLSELPTFISNNVNKTLDVLLIRGYSADGST 190
>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 350 AVRHVGDLGNIEAIEDSGVTKVSIQDSQ 433
A R DL NI +ED V+ S+ DS+
Sbjct: 231 AKRERDDLKNIMQLEDESVSTTSVHDSE 258
>SPAC664.03 |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 457
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 312 STLKNKIMVVPVLLYAMSATSVTLRQLKTLESLK 413
STLK + + PV L A+ ++LR L ESL+
Sbjct: 326 STLKRRHVRAPVSLDAVDGIELSLRDLNDEESLQ 359
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 25.8 bits (54), Expect = 3.9
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -2
Query: 513 PPSPKSSGSAWTTKVRP 463
PPS K++ AWT + RP
Sbjct: 479 PPSQKTNQDAWTNRKRP 495
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 25.4 bits (53), Expect = 5.1
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -2
Query: 291 QPFVLSPNSCTWKPCLPLVKPWTSPETT 208
+PF L+P + + P +KPW P T
Sbjct: 1190 RPFNLTPFAISLNALTPQLKPWLPPTDT 1217
>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 675
Score = 25.4 bits (53), Expect = 5.1
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 480 TTKVRPMMLLGP*REIWESWIDTLVTP 400
+T + P LL E+WE DT +TP
Sbjct: 78 STLIEPNYLLTAWHELWEELQDTYMTP 104
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 25.4 bits (53), Expect = 5.1
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 306 LISTLKNKIMVVPVLLYAMSATSVTLRQLKTLES-LKYQSKIPRSLFM 446
L++T + + +PVLLY + ++ + L++ ES + + KI +L M
Sbjct: 1130 LLNTASHTAVKLPVLLYILDTLNLVITHLQSEESESQLREKILANLVM 1177
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,189,670
Number of Sequences: 5004
Number of extensions: 44079
Number of successful extensions: 121
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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