Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18d24
         (520 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.3  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   7.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   7.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   7.6  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   7.6  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   7.6  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +2

Query: 113 YNITMPAKAVCVLRGDVSGTVFFDQQD 193
           YN+ +P K++   + DV+     D  D
Sbjct: 104 YNVAVPTKSILEKKPDVTTVELVDATD 130


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 8/24 (33%), Positives = 9/24 (37%)
 Frame = -2

Query: 273 PNSCTWKPCLPLVKPWTSPETTTG 202
           P     KPC    +PW    T  G
Sbjct: 293 PIDANTKPCTWAARPWQGYMTNNG 316


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 8/24 (33%), Positives = 9/24 (37%)
 Frame = -2

Query: 273 PNSCTWKPCLPLVKPWTSPETTTG 202
           P     KPC    +PW    T  G
Sbjct: 293 PIDANTKPCTWAARPWQGYMTNNG 316


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 8/24 (33%), Positives = 9/24 (37%)
 Frame = -2

Query: 273 PNSCTWKPCLPLVKPWTSPETTTG 202
           P     KPC    +PW    T  G
Sbjct: 293 PIDANTKPCTWAARPWQGYMTNNG 316


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 8/32 (25%), Positives = 15/32 (46%)
 Frame = +2

Query: 254 FHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSS 349
           F+  ++GD  N C       + E+ ++ G  S
Sbjct: 457 FYQSQYGDPINNCEIKAGEIDAERLNNQGIES 488


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 318 GLK*APADVQPFVLSPN 268
           GL+ A A VQP V+S N
Sbjct: 572 GLRVADASVQPQVISGN 588


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,928
Number of Sequences: 438
Number of extensions: 3463
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)