Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt18d23
(580 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC589.11 |mug82||translation release factor |Schizosaccharomyc... 48 8e-07
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|... 27 2.0
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|... 27 2.0
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 27 2.0
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 26 3.5
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 26 4.6
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi... 25 6.1
SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces p... 25 6.1
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre... 25 8.0
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 25 8.0
>SPAC589.11 |mug82||translation release factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 182
Score = 48.4 bits (110), Expect = 8e-07
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Frame = +3
Query: 303 KLDISYSASSGPGGQNVNKVHTKVDLRFKLSDADWIHPDI---RQRMLELYDKKLTKEGY 473
++ IS+S SSGPGGQNVNK++TKV + + P + E+ + G
Sbjct: 48 QVQISFSRSSGPGGQNVNKLNTKVIVNLPFKQLESCIPMFLINHFKTCEMLRNYRIQNG- 106
Query: 474 LIIKSDCTRSQQLNLADCMRKLRNMIRDAEVT 569
+ I S TRSQ N+ D + K+ +++ + T
Sbjct: 107 IKIYSQKTRSQHKNIEDALNKISDLLNKSAET 138
>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
3|||Manual
Length = 393
Score = 27.1 bits (57), Expect = 2.0
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 433 ILCLISGCIQSASLNLN 383
I C++ GC++S LNLN
Sbjct: 245 ICCILFGCVKSGDLNLN 261
>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
3|||Manual
Length = 368
Score = 27.1 bits (57), Expect = 2.0
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 433 ILCLISGCIQSASLNLN 383
I C++ GC++S LNLN
Sbjct: 212 ICCILFGCVKSGDLNLN 228
>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
Tip1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 27.1 bits (57), Expect = 2.0
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 255 FKPDGNEKFSGFIPIQKLDISYSASSGP 338
FK NEK F+P K ++ S SS P
Sbjct: 56 FKTKNNEKTGIFVPFDKCKLASSISSSP 83
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 26.2 bits (55), Expect = 3.5
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 253 HLNLMVMKNSQDSYRYRNWIYHT 321
H + + K++QDS RNW+ H+
Sbjct: 13 HRSFLQPKDTQDSQDLRNWVSHS 35
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 25.8 bits (54), Expect = 4.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 255 FKPDGNEKFSGFIPIQKLDISYSASSGPG 341
+ P+ N +F+G P+ IS SS PG
Sbjct: 1392 YNPESNMEFTGLKPLSPSKISNLPSSQPG 1420
>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
Ran1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 470
Score = 25.4 bits (53), Expect = 6.1
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Frame = +3
Query: 201 ISLETLYPNSSLKL--TTPAFKP 263
+SL+ L PNSSLK+ TTP P
Sbjct: 371 VSLQVLTPNSSLKVDPTTPLTAP 393
>SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 396
Score = 25.4 bits (53), Expect = 6.1
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 270 NEKFSGFIPIQKLDISYSASSGPGGQNVNKVHTKVDL 380
N++ S ++ I S G GGQ+VN+ + V L
Sbjct: 245 NDESSSLYDSSEVKIEVMRSRGAGGQHVNRTESAVRL 281
>SPBC19C2.09 |sre1||sterol regulatory element binding protein
Sre1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 900
Score = 25.0 bits (52), Expect = 8.0
Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
Frame = +3
Query: 330 SGPGGQNVNKVHTKVDLRFKLSDADWIHPDIRQRMLELYDKKLTKEGYLIIKSD---CTR 500
+GPGG+ H ++ R++ + D I ++R + L + G + D T
Sbjct: 254 AGPGGKPKKTAHNMIEKRYRTNLNDRI-CELRDAVPSLRAAAALRCGNSLDDEDLGGLTP 312
Query: 501 SQQLNLADCMRKLRNMIRDAEVTKRE 578
+++LN + K IR E +E
Sbjct: 313 ARKLNKGTILAKATEYIRHLEAKNKE 338
>SPCC63.04 |mok14||alpha-1,3-glucan synthase
Mok14|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1369
Score = 25.0 bits (52), Expect = 8.0
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 127 TLYVA*LKMQLVLRYFRGPWDTRAPYHWKPSIQIVL*SSPL 249
T VA LV++ ++ + YH+K +I+ VL SP+
Sbjct: 305 TYPVAETAPSLVVKVVNQDYEVKVFYHYKDNIKYVLLDSPI 345
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,281,474
Number of Sequences: 5004
Number of extensions: 45172
Number of successful extensions: 123
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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