Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18d23
         (580 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X81788-1|CAA57387.1|  206|Homo sapiens ICT1 protein protein.          113   4e-25
BT007111-1|AAP35775.1|  206|Homo sapiens immature colon carcinom...   113   4e-25
BC015335-1|AAH15335.1|  206|Homo sapiens immature colon carcinom...   113   4e-25
AK222553-1|BAD96273.1|  206|Homo sapiens immature colon carcinom...   112   1e-24
BC016445-1|AAH16445.1|  617|Homo sapiens vacuolar protein sortin...    31   2.2  
AK027754-1|BAB55345.1|  617|Homo sapiens protein ( Homo sapiens ...    31   2.2  
AF308803-1|AAG34680.1|  617|Homo sapiens vacuolar protein sortin...    31   2.2  
AF201694-1|AAF91174.1|  617|Homo sapiens vacuolar protein sortin...    31   2.2  
Y00318-3|CAA68418.1|  244|Homo sapiens protein ( Human mRNA for ...    31   3.9  
Y00318-1|CAA68416.1|  565|Homo sapiens protein ( Human mRNA for ...    31   3.9  
J02770-1|AAA52455.1|  583|Homo sapiens IF protein.                     31   3.9  

>X81788-1|CAA57387.1|  206|Homo sapiens ICT1 protein protein.
          Length = 206

 Score =  113 bits (272), Expect = 4e-25
 Identities = 57/130 (43%), Positives = 85/130 (65%)
 Frame = +3

Query: 189 YKSSISLETLYPNSSLKLTTPAFKPDGNEKFSGFIPIQKLDISYSASSGPGGQNVNKVHT 368
           +KS  SL+ LYP S    T     P+G ++    IP+ +L ISY  SSGPGGQNVNKV++
Sbjct: 39  FKSIYSLDKLYPESQGSDTAWRV-PNGAKQADSDIPLDRLTISYCRSSGPGGQNVNKVNS 97

Query: 369 KVDLRFKLSDADWIHPDIRQRMLELYDKKLTKEGYLIIKSDCTRSQQLNLADCMRKLRNM 548
           K ++RF L+ A+WI   +RQ++   +  K+ + G LI+ S+ +R Q  NLADC++K+R+M
Sbjct: 98  KAEVRFHLATAEWIAEPVRQKIAITHKNKINRLGELILTSESSRYQFRNLADCLQKIRDM 157

Query: 549 IRDAEVTKRE 578
           I +A  T +E
Sbjct: 158 ITEASQTPKE 167


>BT007111-1|AAP35775.1|  206|Homo sapiens immature colon carcinoma
           transcript 1 protein.
          Length = 206

 Score =  113 bits (272), Expect = 4e-25
 Identities = 57/130 (43%), Positives = 85/130 (65%)
 Frame = +3

Query: 189 YKSSISLETLYPNSSLKLTTPAFKPDGNEKFSGFIPIQKLDISYSASSGPGGQNVNKVHT 368
           +KS  SL+ LYP S    T     P+G ++    IP+ +L ISY  SSGPGGQNVNKV++
Sbjct: 39  FKSIYSLDKLYPESQGSDTAWRV-PNGAKQADSDIPLDRLTISYCRSSGPGGQNVNKVNS 97

Query: 369 KVDLRFKLSDADWIHPDIRQRMLELYDKKLTKEGYLIIKSDCTRSQQLNLADCMRKLRNM 548
           K ++RF L+ A+WI   +RQ++   +  K+ + G LI+ S+ +R Q  NLADC++K+R+M
Sbjct: 98  KAEVRFHLATAEWIAEPVRQKIAITHKNKINRLGELILTSESSRYQFRNLADCLQKIRDM 157

Query: 549 IRDAEVTKRE 578
           I +A  T +E
Sbjct: 158 ITEASQTPKE 167


>BC015335-1|AAH15335.1|  206|Homo sapiens immature colon carcinoma
           transcript 1 protein.
          Length = 206

 Score =  113 bits (272), Expect = 4e-25
 Identities = 57/130 (43%), Positives = 85/130 (65%)
 Frame = +3

Query: 189 YKSSISLETLYPNSSLKLTTPAFKPDGNEKFSGFIPIQKLDISYSASSGPGGQNVNKVHT 368
           +KS  SL+ LYP S    T     P+G ++    IP+ +L ISY  SSGPGGQNVNKV++
Sbjct: 39  FKSIYSLDKLYPESQGSDTAWRV-PNGAKQADSDIPLDRLTISYCRSSGPGGQNVNKVNS 97

Query: 369 KVDLRFKLSDADWIHPDIRQRMLELYDKKLTKEGYLIIKSDCTRSQQLNLADCMRKLRNM 548
           K ++RF L+ A+WI   +RQ++   +  K+ + G LI+ S+ +R Q  NLADC++K+R+M
Sbjct: 98  KAEVRFHLATAEWIAEPVRQKIAITHKNKINRLGELILTSESSRYQFRNLADCLQKIRDM 157

Query: 549 IRDAEVTKRE 578
           I +A  T +E
Sbjct: 158 ITEASQTPKE 167


>AK222553-1|BAD96273.1|  206|Homo sapiens immature colon carcinoma
           transcript 1 variant protein.
          Length = 206

 Score =  112 bits (269), Expect = 1e-24
 Identities = 56/130 (43%), Positives = 85/130 (65%)
 Frame = +3

Query: 189 YKSSISLETLYPNSSLKLTTPAFKPDGNEKFSGFIPIQKLDISYSASSGPGGQNVNKVHT 368
           +KS  SL+ LYP S    T     P+G ++    IP+ +L ISY  SSGPGGQNVN+V++
Sbjct: 39  FKSIYSLDKLYPESQGSDTAWRV-PNGAKQADSDIPLDRLTISYCRSSGPGGQNVNRVNS 97

Query: 369 KVDLRFKLSDADWIHPDIRQRMLELYDKKLTKEGYLIIKSDCTRSQQLNLADCMRKLRNM 548
           K ++RF L+ A+WI   +RQ++   +  K+ + G LI+ S+ +R Q  NLADC++K+R+M
Sbjct: 98  KAEVRFHLATAEWIAEPVRQKIAITHKNKINRLGELILTSESSRYQFRNLADCLQKIRDM 157

Query: 549 IRDAEVTKRE 578
           I +A  T +E
Sbjct: 158 ITEASQTPKE 167


>BC016445-1|AAH16445.1|  617|Homo sapiens vacuolar protein sorting
           33 homolog B (yeast) protein.
          Length = 617

 Score = 31.5 bits (68), Expect = 2.2
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -1

Query: 172 SNAVQVAFLIKPRIKFKRNVAKVILGETLSNMTHKNK 62
           S+  Q+ FL++PRIK  R +A ++  + L+  T K K
Sbjct: 76  SSNEQLCFLVRPRIKNMRYIASLVNADKLAGRTRKYK 112


>AK027754-1|BAB55345.1|  617|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14848 fis, clone PLACE1000492, highly similar to
           Rat vacuolar protein sorting homolog r-vps33b mRNA. ).
          Length = 617

 Score = 31.5 bits (68), Expect = 2.2
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -1

Query: 172 SNAVQVAFLIKPRIKFKRNVAKVILGETLSNMTHKNK 62
           S+  Q+ FL++PRIK  R +A ++  + L+  T K K
Sbjct: 76  SSNEQLCFLVRPRIKNMRYIASLVNADKLAGRTRKYK 112


>AF308803-1|AAG34680.1|  617|Homo sapiens vacuolar protein sorting
           protein 33B protein.
          Length = 617

 Score = 31.5 bits (68), Expect = 2.2
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -1

Query: 172 SNAVQVAFLIKPRIKFKRNVAKVILGETLSNMTHKNK 62
           S+  Q+ FL++PRIK  R +A ++  + L+  T K K
Sbjct: 76  SSNEQLCFLVRPRIKNMRYIASLVNADKLAGRTRKYK 112


>AF201694-1|AAF91174.1|  617|Homo sapiens vacuolar protein sorting
           33B protein.
          Length = 617

 Score = 31.5 bits (68), Expect = 2.2
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -1

Query: 172 SNAVQVAFLIKPRIKFKRNVAKVILGETLSNMTHKNK 62
           S+  Q+ FL++PRIK  R +A ++  + L+  T K K
Sbjct: 76  SSNEQLCFLVRPRIKNMRYIASLVNADKLAGRTRKYK 112


>Y00318-3|CAA68418.1|  244|Homo sapiens protein ( Human mRNA for
           complement control protein factor I. ).
          Length = 244

 Score = 30.7 bits (66), Expect = 3.9
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 402 DWIHPDIRQRMLELYDKKLTKEGY 473
           DWIHPD+++ ++E  D+ +  E Y
Sbjct: 59  DWIHPDLKRIVIEYVDRIIFHENY 82


>Y00318-1|CAA68416.1|  565|Homo sapiens protein ( Human mRNA for
           complement control protein factor I. ).
          Length = 565

 Score = 30.7 bits (66), Expect = 3.9
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 402 DWIHPDIRQRMLELYDKKLTKEGY 473
           DWIHPD+++ ++E  D+ +  E Y
Sbjct: 380 DWIHPDLKRIVIEYVDRIIFHENY 403


>J02770-1|AAA52455.1|  583|Homo sapiens IF protein.
          Length = 583

 Score = 30.7 bits (66), Expect = 3.9
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 402 DWIHPDIRQRMLELYDKKLTKEGY 473
           DWIHPD+++ ++E  D+ +  E Y
Sbjct: 398 DWIHPDLKRIVIEYVDRIIFHENY 421


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,620,519
Number of Sequences: 237096
Number of extensions: 1424987
Number of successful extensions: 2678
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2678
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5985693436
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)