Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18d19
         (613 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    24   1.3  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   5.4  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   5.4  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   9.5  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   9.5  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   9.5  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   9.5  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   9.5  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   9.5  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 481 GVPEGFRFTPPKQETFFKDDANHDPQWS 564
           G P+GF     + +   +DDA H P  S
Sbjct: 404 GSPDGFESVTSQYKNIREDDARHIPHAS 431


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 172 KLLIEGKTKQVFDVPDQP 225
           ++ +EG  K+ F+VP QP
Sbjct: 191 QVFLEGSQKRKFNVPLQP 208


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 172 KLLIEGKTKQVFDVPDQP 225
           ++ +EG  K+ F+VP QP
Sbjct: 191 QVFLEGSQKRKFNVPLQP 208


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +1

Query: 37  FIKGPHCYIHSSRDPHRI 90
           F  G H Y+H+   P+++
Sbjct: 124 FYNGKHSYVHTITVPNKL 141


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +1

Query: 37  FIKGPHCYIHSSRDPHR 87
           F  G H Y+H+   P++
Sbjct: 92  FYNGKHSYLHTITSPNK 108


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/27 (25%), Positives = 14/27 (51%)
 Frame = -2

Query: 558 LGIVVCVILEERLLFWRSEPEAFWYTR 478
           +G VVC + +  +    + P   WY++
Sbjct: 162 IGSVVCSLPQTIVFHLETHPNVTWYSQ 188


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = -3

Query: 557 WGSWFASSLKNVSCFGGVNLKPSGTPGFLFRKEPVAR 447
           W S FA +   +SC G V         F  R  PV R
Sbjct: 511 WNSAFAIAPAVISCLGIVATMAVACLLFHHRDTPVVR 547


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 263 AVILSLLRSKQYPGWSGTSNTCLVLPSMRSLP 168
           A  L+L++++     +GTS T    P+  S+P
Sbjct: 27  AASLTLVKAETPEHLAGTSTTAAATPTPPSVP 58


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = -3

Query: 557 WGSWFASSLKNVSCFGGVNLKPSGTPGFLFRKEPVAR 447
           W S FA +   +SC G V         F  R  PV R
Sbjct: 601 WNSAFAIAPAVISCLGIVATMAVACLLFHHRDTPVVR 637


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,739
Number of Sequences: 438
Number of extensions: 4068
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)