Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18d18
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    31   0.099
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    29   0.53 
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    27   1.2  
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    27   2.1  
SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|...    26   2.8  
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    26   3.7  
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr...    25   6.5  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    25   6.5  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    25   8.6  
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha...    25   8.6  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    25   8.6  

>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 31.1 bits (67), Expect = 0.099
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +2

Query: 287 PKPPELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVPSS 430
           P  P ++P    V P +PV P T++     +  P ++P     +VP S
Sbjct: 221 PPQPAVAPSVSAVVPNLPVHPATAINAQSQSGNPLSNPLFQPSNVPQS 268


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 28.7 bits (61), Expect = 0.53
 Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +2

Query: 269 VKHQRWPKPPELSPIYLPVSPVMPVQPLT---SLTLTQTASGPETSPAS 406
           VKH   P PP   P+   +SP MP  PLT   S T     S PE+ P S
Sbjct: 740 VKHH--PPPP---PVRSSISPSMPPAPLTHANSSTPMNYVSQPESPPQS 783


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +1

Query: 106 NQYSDNEIPRDIDDGKASSVISRAWDYVDDTDKSIAILNVQEI-LKDMASQGDYASQ 273
           NQ S      D+D+  ASS++S A     D+D      N+       +A  GD +SQ
Sbjct: 3   NQSSSGSNTSDLDEESASSLVSSAASPFIDSDLETPRPNISRASTGQLAEDGDTSSQ 59


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 21/87 (24%), Positives = 34/87 (39%)
 Frame = +2

Query: 185 TSMTLTKASPSSTFKRS*RTWPARAIMQVKHQRWPKPPELSPIYLPVSPVMPVQPLTSLT 364
           +S   +KA+    FK +       ++  V+    P PP + P  LP  P M +  +    
Sbjct: 390 SSAVFSKATAEPAFKSAMAIPDMPSMPHVQGFPAPFPPFMMP-GLPQMPPMMMNAIAGQV 448

Query: 365 LTQTASGPETSPASDNLSVPSSDTWDK 445
                + P T+    N SVP   +  K
Sbjct: 449 YHNNRNPPRTNSRPSNASVPPPSSLHK 475


>SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 19/74 (25%), Positives = 34/74 (45%)
 Frame = +1

Query: 76  SAYAAPSVTINQYSDNEIPRDIDDGKASSVISRAWDYVDDTDKSIAILNVQEILKDMASQ 255
           S   +PSV+I     +EIP  +       + + A DY+  T     I++V  ++  + S 
Sbjct: 80  SVEISPSVSIQNRETDEIPSFLTSALQDLLNALAVDYLKFTPSKAWIIHVDAVV--ILSS 137

Query: 256 GDYASQASAVAQTA 297
             Y +  SA++  A
Sbjct: 138 SPYENILSALSLAA 151


>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = +2

Query: 248 PARAIMQVKHQRWPKPPELSPIYLP--VSPVMPVQPLTSLTLTQTASGPETSPASDNLSV 421
           P   +M + +Q     P +     P   +PV P QPL  L  + T   P +  +   L++
Sbjct: 258 PFEQMMAMTNQGMSVSPGVETTSSPFFTAPVEPNQPLQPLRPSMTGPVPSSMGSEATLNM 317

Query: 422 PSS 430
           PS+
Sbjct: 318 PST 320


>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 568

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
 Frame = +2

Query: 185 TSMTLTKASPSSTFKRS*RTWPARAIMQVKHQRWPKPPELSPIYLP-VSPVMPVQPLTSL 361
           T   +T  +  S  KR+   +P       K   W     L+P+    +S  +      + 
Sbjct: 145 TESKMTSVARKSKPKRAGTFYPV-IFFPNKEYLWTGSDSLTPLTSEAISQFLEKPKPKTA 203

Query: 362 TLTQTASGPETSPASDNLSVPSSDT 436
           +L +     +++P  D+LSVPSS++
Sbjct: 204 SLIKAYKMAQSTPDLDSLSVPSSES 228


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
 Frame = +2

Query: 284 WPKPPELS-PIY-----LPVSPVMPVQPLTSLTLTQTASGPETSP 400
           +P P  +S P Y     +PVSP +PV P +S       + P + P
Sbjct: 287 YPHPTGISLPFYPFDSGIPVSPNIPVSPSSSFVPMYPTTFPSSKP 331


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 501 DRVSELTRVDDELIDKIQVLSHVSE 427
           DR+ ELTR+D   ++K+  L   S+
Sbjct: 905 DRIWELTRIDKWFLEKLMGLIRTSQ 929


>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 260 IMQVKHQRWPKPPELSPIYLPV 325
           +M+V   R+P PPE SP  +P+
Sbjct: 269 LMEVALNRFPFPPEGSPPPMPI 290


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +1

Query: 301 IIAHLSAGIPGDACAAANVINSYTDGVRSGNFA-GF 405
           +I   +A +  D  A  N+I+ Y   +  GNFA GF
Sbjct: 646 LIGKANAALSSDLSALENIISVYCSLMAIGNFAKGF 681


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,014,986
Number of Sequences: 5004
Number of extensions: 39780
Number of successful extensions: 153
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)