Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18d16
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom...    25   5.7  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    25   9.9  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    25   9.9  

>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = -3

Query: 538 HYSILSGKIVCLETSSSILSYNRRFSHLLCYGHTC 434
           H  ILS K++C++ S+ + +++ + +  L +   C
Sbjct: 255 HRRILSSKVICIDPSTGLYAFDLQGTAFLWHQVRC 289


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 523 SGKIVCLETSSSILSYNRR 467
           +G++ CL  SSS+ SY R+
Sbjct: 694 NGRLPCLAISSSVTSYGRQ 712


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = -3

Query: 451 CYGHTCAF--FLQANDFWTWNVCGSHD 377
           C G+   F  F  A+  WT N+CGS +
Sbjct: 219 CRGYINPFIQFTMASSKWTCNLCGSEN 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,974,947
Number of Sequences: 5004
Number of extensions: 36326
Number of successful extensions: 68
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)