Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18d11
         (336 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    26   1.8  
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos...    25   2.3  
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    24   7.1  
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    23   9.4  
SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac...    23   9.4  
SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11 |Schizosaccharom...    23   9.4  
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch...    23   9.4  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    23   9.4  

>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 140 ESRSRAIFIIFCKHC*ELGLPFYMKIHRFFVKSFIRK 250
           E     IF  FCK      +  Y +IHR F +SF +K
Sbjct: 775 EKVEEKIFSGFCKRIGISDIHTYDEIHRTFTQSFTQK 811


>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -1

Query: 168 IMKIALDLDSCEYILHYTY-LQYIYNPYTLTVKI 70
           I + ++ +D   Y++   +  Q IYNPYT T K+
Sbjct: 304 IAETSITIDGIVYVVDSGFNKQRIYNPYTRTSKL 337


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 309 TENQIAPSKMKKIKKTGM*YFRINDLTKNL 220
           TE+ + P+   KIK  G   FRI +L   L
Sbjct: 341 TESDLMPTSFGKIKPLGFERFRICELYAEL 370


>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 239 FIRKYYIPVFFIFFILLG 292
           F+ +YY P+ F  F L+G
Sbjct: 181 FVVEYYAPIVFYVFNLMG 198


>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 144 DSCEYILHYTYLQYIYNPY 88
           D+  Y+L   +LQY+Y+ Y
Sbjct: 406 DTSSYLLGQYFLQYVYSIY 424


>SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 128 YCTTPTYNIYIILTR*PSKSNLKTHQPLPCQFHMKALVY 12
           YCT P Y+IY    + P  SN+  +  L C+  + A  Y
Sbjct: 50  YCTKPGYDIYGNSVQTP--SNVPYYSCLMCKREIAASRY 86


>SPAC7D4.11c |sec39||secretory pathway protein Sec39
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 769

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 96  NPYTLTVKIQSKNPSAFTL 40
           NP  L   I S+NPSA+TL
Sbjct: 532 NPDKLIKTIFSQNPSAYTL 550


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 126 LHYTYLQYIYNPYTLTVKIQSKNPSAFTLSVP 31
           L  T   Y+ N  TL   +QS   S FT+SVP
Sbjct: 481 LPITPSSYLSNT-TLHSSVQSSQSSQFTVSVP 511


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,313,569
Number of Sequences: 5004
Number of extensions: 25896
Number of successful extensions: 67
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)