Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18d11
         (336 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68270-4|CAE46687.1|  755|Caenorhabditis elegans Hypothetical pr...    29   1.1  
Z68270-3|CAA92568.1|  769|Caenorhabditis elegans Hypothetical pr...    29   1.1  
U41994-8|AAK31524.1|  752|Caenorhabditis elegans Hypothetical pr...    29   1.1  
U23179-4|AAK68209.1|  341|Caenorhabditis elegans Serpentine rece...    27   2.5  
U53339-6|AAA96202.1|  348|Caenorhabditis elegans Serpentine rece...    27   3.3  
Z82051-9|CAB04820.1|  350|Caenorhabditis elegans Hypothetical pr...    26   5.8  
Z82051-7|CAB04819.1|  364|Caenorhabditis elegans Hypothetical pr...    26   5.8  
AF039040-2|AAO91670.1|  615|Caenorhabditis elegans Hypothetical ...    26   7.7  

>Z68270-4|CAE46687.1|  755|Caenorhabditis elegans Hypothetical
           protein ZC410.4b protein.
          Length = 755

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +2

Query: 212 KIHRFFVKSFIRKYYIPVFFI-FFILLGAIWFSVI 313
           + HR + K +  KY  P+ FI F++L+GAI F ++
Sbjct: 77  RFHRMY-KEYHIKYLFPLIFIMFYMLIGAIIFYLL 110


>Z68270-3|CAA92568.1|  769|Caenorhabditis elegans Hypothetical
           protein ZC410.4a protein.
          Length = 769

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +2

Query: 212 KIHRFFVKSFIRKYYIPVFFI-FFILLGAIWFSVI 313
           + HR + K +  KY  P+ FI F++L+GAI F ++
Sbjct: 77  RFHRMY-KEYHIKYLFPLIFIMFYMLIGAIIFYLL 110


>U41994-8|AAK31524.1|  752|Caenorhabditis elegans Hypothetical
           protein F59A6.4 protein.
          Length = 752

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 17/57 (29%), Positives = 31/57 (54%)
 Frame = -1

Query: 183 QCLQKIMKIALDLDSCEYILHYTYLQYIYNPYTLTVKIQSKNPSAFTLSVPHEGTSL 13
           + L+K +   L +D C +++    L+ I N ++L    ++ NPSAF   +  + TSL
Sbjct: 192 EILKKTINGPLSMD-CSFVVGLQMLRAIQNLHSLGYVHRNINPSAFNCGLGMDETSL 247


>U23179-4|AAK68209.1|  341|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 3 protein.
          Length = 341

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 146 SIPVNIYCTTPTYNIYIIL 90
           S+   ++CT PTYN+ I++
Sbjct: 273 SVARGVFCTVPTYNLIIVI 291


>U53339-6|AAA96202.1|  348|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 12 protein.
          Length = 348

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 131 IYCTTPTYNIYII 93
           +YC TPTYN+ I+
Sbjct: 282 VYCATPTYNLVIV 294


>Z82051-9|CAB04820.1|  350|Caenorhabditis elegans Hypothetical
           protein T23D5.12 protein.
          Length = 350

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +2

Query: 212 KIHRFFVKSFIRKYYIPVFFIFFILLGAIWFSVIN 316
           ++H  F K+ I +  +P   +FF ++  I+  V N
Sbjct: 241 RLHTQFFKALILQIVVPTILLFFPMIIIIYLPVFN 275


>Z82051-7|CAB04819.1|  364|Caenorhabditis elegans Hypothetical
           protein T23D5.10 protein.
          Length = 364

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +2

Query: 212 KIHRFFVKSFIRKYYIPVFFIFFILLGAIWFSVIN 316
           ++H  F K+ I +  +P   +FF ++  I+  V N
Sbjct: 255 RLHTQFFKALILQIVVPTILLFFPMIIIIYLPVFN 289


>AF039040-2|AAO91670.1|  615|Caenorhabditis elegans Hypothetical
           protein T22B11.4b protein.
          Length = 615

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 23/69 (33%), Positives = 28/69 (40%)
 Frame = -1

Query: 318 KFITENQIAPSKMKKIKKTGM*YFRINDLTKNLCIFI*NGSPNS*QCLQKIMKIALDLDS 139
           K + EN I     KKIK     Y +IN    NL I + N    S Q   K ++     D 
Sbjct: 535 KKLAENYIIDKLKKKIKNQHFSYPKINCSNLNLQILLNNLFFISSQIALKCVQSRPIFDL 594

Query: 138 CEYILHYTY 112
            E  LH  Y
Sbjct: 595 FEVSLHENY 603


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,042,930
Number of Sequences: 27780
Number of extensions: 138628
Number of successful extensions: 352
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)