Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt18d07
(546 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|... 51 1e-07
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 29 0.34
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 28 0.78
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa... 27 2.4
SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|... 26 3.2
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 26 4.2
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 26 4.2
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch... 25 5.5
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 5.5
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 25 7.3
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 25 7.3
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo... 25 9.6
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 9.6
SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1 |Schizosaccharo... 25 9.6
>SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 260
Score = 50.8 bits (116), Expect = 1e-07
Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 5/120 (4%)
Frame = +2
Query: 194 NANWQKLLAS--NLLMDHKEEKQAPKEQYTGKFR-RNRKTEQKINKSKDLQPTVRKFETL 364
++NW+KL + E+K + +++Y + +N + E K ++KF
Sbjct: 3 SSNWEKLKKKLDSAKSGRVEKKHSNEKKYLKSVKGKNNENENSYIVDKKRMNELKKFAKE 62
Query: 365 NLEPDQA--DGHEDDIALNDRKQAKNKITKFIAMDCEMVGIGYDGNDHMLARVSLVNKFG 538
N P+ D + D + RK + K+IAMDCEMVG+ D + +LARVS+VN G
Sbjct: 63 NDIPESQVLDAYGVDASKLTRKTNLETLGKYIAMDCEMVGVADDMS--VLARVSIVNYHG 120
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 29.5 bits (63), Expect = 0.34
Identities = 18/68 (26%), Positives = 30/68 (44%)
Frame = +2
Query: 221 SNLLMDHKEEKQAPKEQYTGKFRRNRKTEQKINKSKDLQPTVRKFETLNLEPDQADGHED 400
S+ MDH ++KQA + + K RK + ++ + VR+ N+E G
Sbjct: 520 SSTEMDH-QQKQARRRRVRRKHAEKRKQMAEKRRNSGTEQVVRQLSKSNVEVIGKGGERK 578
Query: 401 DIALNDRK 424
+A N K
Sbjct: 579 KVASNSNK 586
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 28.3 bits (60), Expect = 0.78
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = +2
Query: 263 KEQYTGKFRRNRKTEQKINKSKDLQPTVRKFETLNLEPDQADGHEDDIALNDRKQAKNKI 442
K++Y K RN +++ K + +PT + + NL + +EDDI DRKQ +
Sbjct: 812 KQEYLTK--RNFESKLKSSAVSSRKPTFNEVKPANLLAEDLSDNEDDI---DRKQGLFSL 866
Query: 443 TK 448
K
Sbjct: 867 AK 868
>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 26.6 bits (56), Expect = 2.4
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +2
Query: 281 KFRRNRKTEQKINKSKDLQPTVRKFETLNLEPDQADGHEDDIALNDRKQAKNKITK 448
+FR +K E+K ++KDL R +++ P + + + L D + KNK +
Sbjct: 163 QFRERKKIEKK-QEAKDLSLKNRAALDIDILPPSSSDKDKALLLLDNELGKNKFIR 217
>SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 287
Score = 26.2 bits (55), Expect = 3.2
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 2/111 (1%)
Frame = +2
Query: 2 TVIAILYSLIFIFTILYLSCNSFVTIV--RSFFNFIFGINMVENSHKRKRTASDDHNQTV 175
TV A YS +FI T+L + ++ R + + G+ V K A + +
Sbjct: 81 TVFAGSYSALFIMTLLGVLLGHAAPLLFPRKLTDILGGVLFVIFGIKMLMEAKEVMDSKE 140
Query: 176 SLRGLINANWQKLLASNLLMDHKEEKQAPKEQYTGKFRRNRKTEQKINKSK 328
S+ N + +A+N +D E+ A YTG R+ T KSK
Sbjct: 141 SMSDEFQ-NVRNEIAANGPIDQLLEEGAAPSHYTGHRSRSGHTLMSQLKSK 190
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 25.8 bits (54), Expect = 4.2
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = +2
Query: 194 NANWQKLLASNLLMDHKEEKQAPKEQYTGKFRRNRKTEQKINKSKDLQPTVRKFETLNLE 373
NAN+ +L L H+ + + FR +Q + KDL+ + + + L L+
Sbjct: 710 NANFHRLEQEIQLKQHELTLLIEQRETDSSFRLLSDYQQYKDDVKDLKQRLPELDRLILQ 769
Query: 374 PDQA 385
DQA
Sbjct: 770 SDQA 773
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = -1
Query: 153 EAVRFRL*EFSTIFIPKMKLKKLLTIVTKELQDKYNIVKM 34
EAV+ ++ E+ ++P+M+ K + TKE Q + + K+
Sbjct: 254 EAVKAKVKEYEEEYVPEMERMKEIQRQTKERQKEAQLSKL 293
>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 684
Score = 25.4 bits (53), Expect = 5.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 152 SDDHNQTVSLRGLINANWQKLLASNLLMDH 241
SDD N + + +A+WQKLL L H
Sbjct: 254 SDDENISRHSKSYYDASWQKLLEFGLDRSH 283
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.4 bits (53), Expect = 5.5
Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Frame = +2
Query: 248 EKQAPKEQYTGKFRRNRKTEQKINKSKDLQP-----TVRKFETLNLEPDQADGHE 397
+KQ G R NKSKDL P +V +F + N P D E
Sbjct: 3050 KKQQAANVLRGNSRLRENDSSSDNKSKDLSPSGSFSSVSQFNSKNGSPSSIDSSE 3104
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 25.0 bits (52), Expect = 7.3
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 6/105 (5%)
Frame = +2
Query: 245 EEKQAPKEQ--YTGKF-RRNRKTEQKINKSKDLQPTVRKFETLNLEPDQADGHEDDIALN 415
EEK+ KE+ Y + R + +Q I + + P + ET EP + E++
Sbjct: 746 EEKRLQKERAKYAKQMSRESAHADQAIANTGPVAPPYFEHET---EPSHYEEEEEEEPEE 802
Query: 416 DRKQAKNKITKFIAMDCEMVGIGYD---GNDHMLARVSLVNKFGD 541
R+++ + + E Y GND ++ R +VN FG+
Sbjct: 803 RREESSHFSESSGNNEFEETEQEYTHGYGNDVLVQRTDVVNNFGE 847
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +2
Query: 206 QKLLASNLLMDHKEEKQAPKEQYTGKFRRNRKTEQKINK 322
QKL +++ H+E +P QY RR E + K
Sbjct: 116 QKLRTGDVVPHHRERSPSPPPQYDNHGRRLNTREIRYKK 154
>SPBC19G7.10c |||topoisomerase associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 744
Score = 24.6 bits (51), Expect = 9.6
Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 1/91 (1%)
Frame = +2
Query: 200 NWQKLLASNLLMDHKEEKQAPKEQYTGKFRRNRKTEQKINKSKDLQPTVRKFETLNLEPD 379
N Q + A + E Q + +F INK DLQP +E N+ P+
Sbjct: 84 NQQNIFAKPVKPASSELPQVSRLNGASQFPSREPASTAINKLSDLQPMASIWE--NIVPE 141
Query: 380 QADGHEDDIA-LNDRKQAKNKITKFIAMDCE 469
+ ++A L DR A+ F + E
Sbjct: 142 KPAIIPPEVASLQDRLGAQPSEKVFSLQELE 172
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 24.6 bits (51), Expect = 9.6
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Frame = +2
Query: 77 IVRSFFNFIFGINMVENSHKRKRTASDDHNQTVSLRGLINANWQKLLASNLLMD--HK-- 244
I + F IF N + H R + + + T S + ++ AS L + HK
Sbjct: 301 IFNNRFIKIFWYNPSKGFHNRPKKFASHKSPTTSDSSNVESSEDVDPASLLQNEEFHKLI 360
Query: 245 EEKQAPKEQYTGKFRRNRKTEQKINKSK 328
EE+Q E+ + N+K +++N+ K
Sbjct: 361 EERQRQHEERLKRINANKKALEELNQKK 388
>SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 325
Score = 24.6 bits (51), Expect = 9.6
Identities = 21/87 (24%), Positives = 33/87 (37%)
Frame = +2
Query: 113 NMVENSHKRKRTASDDHNQTVSLRGLINANWQKLLASNLLMDHKEEKQAPKEQYTGKFRR 292
N+ SHKRKR+ D++ + R + +L E + + + G
Sbjct: 20 NLSVKSHKRKRSFDDENLELEESREETSGG---ILKKAKTQSFSESLERFRFAHAGSNNE 76
Query: 293 NRKTEQKINKSKDLQPTVRKFETLNLE 373
RKT+ N D ET+ LE
Sbjct: 77 YRKTDVVKNSDTDNGLLKSAVETITLE 103
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,145,772
Number of Sequences: 5004
Number of extensions: 42830
Number of successful extensions: 136
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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