Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18d07
         (546 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   1.5  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   2.7  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   3.5  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   6.2  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +2

Query: 2   TVIAILYSLIFIFTILYLSCNSFVTIVRSFFNFIFGINMVEN 127
           TV+ + +    + TIL    N  + I  S  + + G ++VE+
Sbjct: 389 TVVCLAFWSFIVSTILLWFINKIIPIRMSIHDELLGADLVEH 430


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 355 KFPNGWLQVF 326
           K+PN WL VF
Sbjct: 166 KYPNNWLSVF 175


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = +2

Query: 245 EEKQAPKEQYTGKFRRNRKTEQKINKSKDLQPTVRKFETLNL 370
           +EK A   + T K ++ +  E+ I    +   T  +F+T+ +
Sbjct: 144 DEKNAGNNKITMKSKKEQNAEEDIVDPVEENETYDEFDTIRI 185


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 14/71 (19%), Positives = 30/71 (42%)
 Frame = +2

Query: 290 RNRKTEQKINKSKDLQPTVRKFETLNLEPDQADGHEDDIALNDRKQAKNKITKFIAMDCE 469
           RN +   + + S   + ++R ++TL    D+  GH +  +    +   NK+      +  
Sbjct: 30  RNVEASGQRSVSSGFRSSLRNYKTLISSHDELPGHINCDSSKFEEDLMNKLPTTPEYNNH 89

Query: 470 MVGIGYDGNDH 502
           + G   D  D+
Sbjct: 90  LYGSTPDSRDY 100


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,724
Number of Sequences: 438
Number of extensions: 3154
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)