Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt18d06
(548 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical pr... 168 3e-42
AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin co... 54 7e-08
U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein. 53 1e-07
AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin con... 53 1e-07
Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical pr... 51 5e-07
S56051-1|AAB25489.2| 147|Caenorhabditis elegans ubiquitin-conju... 51 5e-07
Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical p... 44 7e-05
AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin co... 43 1e-04
U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin conju... 41 7e-04
U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin conju... 38 0.004
AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin con... 36 0.025
AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin con... 34 0.059
U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin conju... 33 0.14
AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical... 33 0.14
AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical ... 33 0.14
AF040645-12|AAB94978.2| 78|Caenorhabditis elegans Hypothetical... 32 0.31
AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin co... 32 0.31
U39674-4|AAA80414.2| 182|Caenorhabditis elegans Ubiquitin conju... 31 0.41
U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin conju... 31 0.41
Z19155-3|CAA79558.2| 812|Caenorhabditis elegans Hypothetical pr... 31 0.55
Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 29 2.9
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 29 2.9
AC024798-1|AAK29914.3| 722|Caenorhabditis elegans Hypothetical ... 29 2.9
U28738-2|AAA68309.4| 982|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z99284-2|CAL49452.1| 546|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z92796-7|CAB63230.2| 546|Caenorhabditis elegans Hypothetical pr... 27 6.7
L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family... 27 8.9
>Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical
protein F39B2.2 protein.
Length = 139
Score = 168 bits (408), Expect = 3e-42
Identities = 73/113 (64%), Positives = 85/113 (75%)
Frame = +2
Query: 209 VVVPRNFRLLEELEQGQKGVGDGTISWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLK 388
V VPRNFRLLEELE+GQKG GDG ISWGLE D DMTLT WT IIGPPRTPYE+R+Y+L+
Sbjct: 2 VDVPRNFRLLEELEEGQKGKGDGNISWGLEDDSDMTLTRWTASIIGPPRTPYESRIYNLQ 61
Query: 389 IECGTRYPDEPPTARFISRIHMNCVNSQTGLVDNRQVPILARWQRDYTIKTVL 547
I+CG YP EPPT RF +++HM VN G++D R + L W Y IKTVL
Sbjct: 62 IQCGGNYPREPPTVRFTTKVHMVGVNQSNGVIDKRNLTTLRNWSNSYMIKTVL 114
>AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein20 protein.
Length = 199
Score = 54.0 bits (124), Expect = 7e-08
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Frame = +2
Query: 317 LTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNSQTGLVDNRQ 496
LT G I GPP TPY M+ L I+ +YP PP +F ++I V+SQTG++
Sbjct: 36 LTEIKGHIRGPPDTPYAGGMFDLDIKIPDQYPFSPPNVKFSTKIWHPNVSSQTGVI---C 92
Query: 497 VPILA-RWQRDYTIKTVL 547
+ IL +W T++TVL
Sbjct: 93 LDILKDQWAASLTLRTVL 110
>U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein.
Length = 192
Score = 53.2 bits (122), Expect = 1e-07
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 1/114 (0%)
Frame = +2
Query: 209 VVVPRNFRLLEELEQGQKGVGDGTISWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLK 388
+ P RL+ + ++ Q+ G G ++D++ LT W +I GP TP+E+ + L
Sbjct: 1 MTTPSRRRLMRDFKKLQEDPPAGVS--GAPTEDNI-LT-WEAIIFGPQETPFEDGTFKLS 56
Query: 389 IECGTRYPDEPPTARFISRI-HMNCVNSQTGLVDNRQVPILARWQRDYTIKTVL 547
+E YP++PPT +FIS++ H N + +D Q RW Y + +L
Sbjct: 57 LEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDILQ----NRWSPTYDVAAIL 106
>AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein1 protein.
Length = 192
Score = 53.2 bits (122), Expect = 1e-07
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 1/114 (0%)
Frame = +2
Query: 209 VVVPRNFRLLEELEQGQKGVGDGTISWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLK 388
+ P RL+ + ++ Q+ G G ++D++ LT W +I GP TP+E+ + L
Sbjct: 1 MTTPSRRRLMRDFKKLQEDPPAGVS--GAPTEDNI-LT-WEAIIFGPQETPFEDGTFKLS 56
Query: 389 IECGTRYPDEPPTARFISRI-HMNCVNSQTGLVDNRQVPILARWQRDYTIKTVL 547
+E YP++PPT +FIS++ H N + +D Q RW Y + +L
Sbjct: 57 LEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDILQ----NRWSPTYDVAAIL 106
>Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical
protein M7.1 protein.
Length = 147
Score = 51.2 bits (117), Expect = 5e-07
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Frame = +2
Query: 317 LTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNSQTGLVDNRQ 496
L HW I+GPP +PY+ ++ L I T YP +PP F +RI+ +NS +
Sbjct: 30 LFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC---- 85
Query: 497 VPIL-ARWQRDYTIKTVL 547
+ IL ++W TI VL
Sbjct: 86 LDILRSQWSPALTISKVL 103
>S56051-1|AAB25489.2| 147|Caenorhabditis elegans
ubiquitin-conjugating enzyme protein.
Length = 147
Score = 51.2 bits (117), Expect = 5e-07
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Frame = +2
Query: 317 LTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNSQTGLVDNRQ 496
L HW I+GPP +PY+ ++ L I T YP +PP F +RI+ +NS +
Sbjct: 30 LFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC---- 85
Query: 497 VPIL-ARWQRDYTIKTVL 547
+ IL ++W TI VL
Sbjct: 86 LDILRSQWSPALTISKVL 103
>Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical
protein F58A4.10 protein.
Length = 164
Score = 44.0 bits (99), Expect = 7e-05
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +2
Query: 272 DGTISWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRI- 448
DG S GL D+D + W ++IGPP T YE + ++ YP +PP +FIS I
Sbjct: 21 DG-FSAGLVDDND--IYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIW 77
Query: 449 HMN 457
H N
Sbjct: 78 HPN 80
>AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein3 protein.
Length = 243
Score = 43.2 bits (97), Expect = 1e-04
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 10/84 (11%)
Frame = +2
Query: 326 WTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRI-HMN-------CVNSQTGL 481
WT I GPP+T Y+ + I + YP PP+ +F +++ H N C++
Sbjct: 42 WTVGIYGPPKTLYQGGYFKASIRFPSNYPYSPPSMKFTTKVWHPNVYENGDLCISILHSP 101
Query: 482 VDNRQVPILA--RWQRDYTIKTVL 547
+D+ Q LA RW +++T+L
Sbjct: 102 IDDPQSGELACERWNPTQSVRTIL 125
>U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein23 protein.
Length = 546
Score = 40.7 bits (91), Expect = 7e-04
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = +2
Query: 332 GMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNSQTGLV 484
G+I G TPYE ++ L I+ G YP + PT +FI++I V+ G +
Sbjct: 383 GIIKGVEETPYEGGIFELDIKIGESYPFKAPTVKFITKIWHPSVSPFDGTI 433
>U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein21 protein.
Length = 229
Score = 38.3 bits (85), Expect = 0.004
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 16/88 (18%)
Frame = +2
Query: 332 GMIIGPPRTPYENRMYSLKIECGTRYPDEPP---------------TARFISRIHMNCVN 466
G I GP TPY + +K++ YP EPP A+F++RI ++
Sbjct: 55 GFIKGPEGTPYAGGTFEIKVDIPEHYPFEPPKVTEIIFHIRAFEYIQAKFVTRIWHPNIS 114
Query: 467 SQTGLVDNRQVPILA-RWQRDYTIKTVL 547
SQTG + + IL +W T++TVL
Sbjct: 115 SQTGTI---CLDILKDKWTASLTLRTVL 139
>AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein26 protein.
Length = 203
Score = 35.5 bits (78), Expect = 0.025
Identities = 20/80 (25%), Positives = 37/80 (46%)
Frame = +2
Query: 308 DMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNSQTGLVD 487
+ + W +IIG P+TPYE +Y K+ +P +PP ++ N++ L
Sbjct: 34 ETNILEWRYIIIGAPKTPYEGGIYMGKLLFPKDFPFKPPAILMLTPNGRFQTNTRLCLSI 93
Query: 488 NRQVPILARWQRDYTIKTVL 547
+ P W +T+ T++
Sbjct: 94 SDYHP--DTWNPAWTVSTII 111
>AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein8 protein.
Length = 221
Score = 34.3 bits (75), Expect = 0.059
Identities = 13/47 (27%), Positives = 28/47 (59%)
Frame = +2
Query: 344 GPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNSQTGLV 484
GP T YEN ++ ++++ +YP + P+ F+++I ++ +G V
Sbjct: 41 GPKDTAYENGVWRIRVDMPDKYPFKSPSIGFLNKIFHPNIDEASGTV 87
>U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein17 protein.
Length = 679
Score = 33.1 bits (72), Expect = 0.14
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 335 MIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFIS 442
+I GP TPY N ++ I T YP PP F++
Sbjct: 448 LISGPDDTPYANGLFEFDIFFPTGYPFSPPKCAFLT 483
>AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical
protein Y87G2A.9 protein.
Length = 170
Score = 33.1 bits (72), Expect = 0.14
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +2
Query: 230 RLLEELEQGQKGVGDGTISWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRY 409
RL+ E ++ +G I+ ++ D+ W +I GP T + N ++ +I Y
Sbjct: 8 RLMTEYKELTTRPPEGIIAAPIDEDN---FFEWECLITGPEETCFANGVFPARITFPQDY 64
Query: 410 PDEPPTARFISRI-HMN 457
P PP RF I H N
Sbjct: 65 PLSPPKMRFTCGIFHPN 81
>AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical
protein Y54E5B.4 protein.
Length = 152
Score = 33.1 bits (72), Expect = 0.14
Identities = 18/70 (25%), Positives = 32/70 (45%)
Frame = +2
Query: 230 RLLEELEQGQKGVGDGTISWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRY 409
RL++EL Q + +G + + +D L W ++G T Y ++ L+ G +Y
Sbjct: 8 RLMKELAQLKSEAPEGLLVDNTSTSND--LKQWKIGVVGAEGTLYAGEVFMLQFTFGPQY 65
Query: 410 PDEPPTARFI 439
P P F+
Sbjct: 66 PFNSPEVMFV 75
>AF040645-12|AAB94978.2| 78|Caenorhabditis elegans Hypothetical
protein F52C6.12 protein.
Length = 78
Score = 31.9 bits (69), Expect = 0.31
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 284 SWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLKI 391
S G DD L HW I+GPP +PY+ ++ L I
Sbjct: 22 STGSVGDD---LYHWQATIMGPPESPYQGGIFFLTI 54
>AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein13 protein.
Length = 151
Score = 31.9 bits (69), Expect = 0.31
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = +2
Query: 305 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIH 451
D+ ++ MI GP +P+ ++ L++ YP P RF+++I+
Sbjct: 29 DESNARYFHVMIAGPDDSPFAGGVFKLELFLPEEYPMAAPKVRFMTKIY 77
>U39674-4|AAA80414.2| 182|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein22 protein.
Length = 182
Score = 31.5 bits (68), Expect = 0.41
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +2
Query: 338 IIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNSQTGLV 484
I GP TPYE ++ + + YP+ P +F + I V TG V
Sbjct: 35 IAGPADTPYETGVFEVDLTFPDNYPNALPQIKFQTLIWNCAVEPSTGQV 83
>U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein18 protein.
Length = 153
Score = 31.5 bits (68), Expect = 0.41
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +2
Query: 305 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIH 451
++ L WT ++I P + PY + + I YP +PP F ++I+
Sbjct: 28 EETNLLKWTVLLI-PDKEPYNKGAFKVGITFPVDYPFKPPKVAFETKIY 75
>Z19155-3|CAA79558.2| 812|Caenorhabditis elegans Hypothetical
protein F54G8.2 protein.
Length = 812
Score = 31.1 bits (67), Expect = 0.55
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = +2
Query: 269 GDGTISWGLESDDDMTLTH 325
GDGTI W LES D MT H
Sbjct: 485 GDGTIGWVLESMDKMTFPH 503
>Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical
protein F49E12.4 protein.
Length = 160
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/62 (22%), Positives = 33/62 (53%)
Frame = +2
Query: 362 YENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNSQTGLVDNRQVPILARWQRDYTIKT 541
Y+N +++L ++ YP +PP +F ++ V+ T + + + + W+ + T++
Sbjct: 57 YKNMIFTLTLDVNVEYPFKPPYLKFCHNVYHPNVDPVTCELCSPML-LQENWKPETTMED 115
Query: 542 VL 547
VL
Sbjct: 116 VL 117
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/56 (23%), Positives = 26/56 (46%)
Frame = +2
Query: 296 ESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCV 463
+ D++ L G PR +N+++ KI+C + + + P F+ R C+
Sbjct: 56 DGSDEVCLPWQFDCQFGSPRCISKNKLHDKKIDCYSGFDEGCPAHYFVCRDRSACI 111
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/56 (23%), Positives = 26/56 (46%)
Frame = +2
Query: 296 ESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCV 463
+ D++ L G PR +N+++ KI+C + + + P F+ R C+
Sbjct: 56 DGSDEVCLPWQFDCQFGSPRCISKNKLHDKKIDCYSGFDEGCPAHYFVCRDRSACI 111
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane
cell adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/56 (23%), Positives = 26/56 (46%)
Frame = +2
Query: 296 ESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCV 463
+ D++ L G PR +N+++ KI+C + + + P F+ R C+
Sbjct: 56 DGSDEVCLPWQFDCQFGSPRCISKNKLHDKKIDCYSGFDEGCPAHYFVCRDRSACI 111
>AC024798-1|AAK29914.3| 722|Caenorhabditis elegans Hypothetical
protein Y48G9A.10 protein.
Length = 722
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 224 NFRLLEELEQGQKGVGDGTISWGLESDDDMTL 319
N +LLE +E Q + T WG+E+ D M++
Sbjct: 358 NKKLLEVIETSQYVISMDTAKWGVETSDKMSV 389
>U28738-2|AAA68309.4| 982|Caenorhabditis elegans Hypothetical
protein T28D9.7 protein.
Length = 982
Score = 27.9 bits (59), Expect = 5.1
Identities = 17/57 (29%), Positives = 22/57 (38%)
Frame = -2
Query: 508 KNWDLSIIHKSSLTIDTVHMNPRNKAGCWWLIRVSCSTFNFKGVHSILVGCPWWANN 338
K+WD+ + H R GC W SC +FK V + C WA N
Sbjct: 188 KSWDMDAV---KFLRSAAHWKSRMILGCTWPNGTSCKLSDFKAVWTTTGLC--WAIN 239
>Z99284-2|CAL49452.1| 546|Caenorhabditis elegans Hypothetical
protein H25K10.1 protein.
Length = 546
Score = 27.5 bits (58), Expect = 6.7
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -2
Query: 349 WANNHSSPMSKSHIIIAFKTPRNGSIAHSLLALFKF 242
+A NH S +HII F P+NG +L F F
Sbjct: 188 FAGNHESNSIFNHIIHRFTMPKNGVYNDNLFWSFDF 223
>Z92796-7|CAB63230.2| 546|Caenorhabditis elegans Hypothetical
protein H25K10.1 protein.
Length = 546
Score = 27.5 bits (58), Expect = 6.7
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -2
Query: 349 WANNHSSPMSKSHIIIAFKTPRNGSIAHSLLALFKF 242
+A NH S +HII F P+NG +L F F
Sbjct: 188 FAGNHESNSIFNHIIHRFTMPKNGVYNDNLFWSFDF 223
>L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family
protein 3 protein.
Length = 3343
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = -2
Query: 529 IVTLPSSKNWDLSIIHKSSLTIDTVHMN 446
+VT P++ W+L II++S T+ ++ N
Sbjct: 2803 VVTSPANSTWNLRIINESPETVKSLENN 2830
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,705,898
Number of Sequences: 27780
Number of extensions: 264056
Number of successful extensions: 582
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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