Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18d05
         (633 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0608 - 23628100-23631486                                         29   3.1  
10_08_0361 + 17207657-17207701,17208850-17209773                       27   9.4  
07_03_1651 - 28395369-28395436,28395524-28395575,28395857-283960...    27   9.4  

>01_05_0608 - 23628100-23631486
          Length = 1128

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/31 (51%), Positives = 21/31 (67%)
 Frame = -3

Query: 409 SHILLISVELLSITSSILNMSSNFLSGTLIS 317
           S++L   V  L I+ + LN+SSNFLSG L S
Sbjct: 703 SNLLTGQVPQLPISMTRLNLSSNFLSGPLPS 733


>10_08_0361 + 17207657-17207701,17208850-17209773
          Length = 322

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/60 (20%), Positives = 26/60 (43%)
 Frame = +1

Query: 208 ESNNVTRLRKMKQKRNLHLLILGNSHQSLIQNKHSEKKLMCQTRNWRTYLK*NLLLTRVQ 387
           E N +     ++  +  H+L+  N    +  N   EK +  +T+ W T     L++  ++
Sbjct: 137 EDNQLLSQCDLRNDQTFHVLVCPNDKLHVFINVRGEKTIGLETKRWYTVADVKLMIENLE 196


>07_03_1651 -
           28395369-28395436,28395524-28395575,28395857-28396092,
           28396362-28396419,28396509-28396577,28396686-28396791,
           28397104-28397171,28397266-28397385,28398144-28398231,
           28399433-28399534,28399699-28399757,28399866-28400003,
           28400222-28400473,28400508-28400593,28401061-28401165,
           28402351-28402516
          Length = 590

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = +1

Query: 502 SCFLFHAHRA-MSLSCARCMDTLF 570
           SC LF + R  +SL+C+ C+DT+F
Sbjct: 184 SCNLFDSMRVDISLTCSICLDTVF 207


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,523,861
Number of Sequences: 37544
Number of extensions: 297675
Number of successful extensions: 859
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)