Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt18c23
(553 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.16c |fmn1||riboflavin kinase Fmn1|Schizosaccharomyces pom... 123 2e-29
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 30 0.26
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo... 26 4.2
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 25 5.6
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar... 25 5.6
SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyc... 25 5.6
SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|ch... 25 5.6
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 25 7.4
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 25 7.4
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ... 25 7.4
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy... 25 7.4
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 25 9.8
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang... 25 9.8
>SPCC18.16c |fmn1||riboflavin kinase Fmn1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 163
Score = 123 bits (297), Expect = 2e-29
Identities = 60/145 (41%), Positives = 89/145 (61%)
Frame = +1
Query: 118 KMSSVLPFFLEGEVVKGFGRGSKELGCPTANYPLEVVKSLPKGLEPGVYYGWAQVDTGPV 297
K+ S P EG+VV GFGRGSKELG PTAN + ++ L + + GVY+G+A V V
Sbjct: 17 KVQSPYPIRFEGKVVHGFGRGSKELGIPTANISEDAIQELLRYRDSGVYFGYAMVQKR-V 75
Query: 298 YEMVANIGWCPFYQNKEMSVETHIMHNFQGDFYGSNLKIALIGYLRGEKNFNCLDALIEQ 477
+ MV ++GW P+Y+NK S E H++ DFY +++ ++GY+R E N+ LD LIE
Sbjct: 76 FPMVMSVGWNPYYKNKLRSAEVHLIERQGEDFYEEIMRVIVLGYIRPELNYAGLDKLIED 135
Query: 478 IREDIKNSEQNLKQPSAQSLRNHSF 552
I DI+ + ++ +PS S + F
Sbjct: 136 IHTDIRVALNSMDRPSYSSYKKDPF 160
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 29.9 bits (64), Expect = 0.26
Identities = 21/70 (30%), Positives = 33/70 (47%)
Frame = -1
Query: 421 LEQFLN*NHRNHPGNCALYGFQQTSLYFGKKDTILYLLPSHIQVLCQLEPIHNKHLAPNL 242
L+ + N HR CAL F++T + G+ D +L + P HI+ Q+ L +
Sbjct: 631 LKFYFNLLHRKVRNGCALLHFKETEILEGEWDFLLAVCP-HIEHGFQIMSKSLSSLVGEI 689
Query: 241 LVKILQLPKD 212
L I + KD
Sbjct: 690 LTNINRYLKD 699
>SPBC13G1.08c |ash2||Ash2-trithorax family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 25.8 bits (54), Expect = 4.2
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -1
Query: 361 FQQTSLYFGKKDTILYLLPSHIQVLC 284
FQ + +F KK+ ++ + H Q+LC
Sbjct: 142 FQANTYFFKKKEDLIPFIEEHWQLLC 167
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = +1
Query: 358 ETHIMHNFQGDFYGSNLKIALIGYLRGEKNFNCLDALIEQI 480
ETHI H + + G KI ++ Y G N +E +
Sbjct: 1081 ETHIQHFIKKFYAGDEKKIPIVEYFGGVPPVNVSHKSLESV 1121
>SPMIT.02 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 384
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/41 (24%), Positives = 23/41 (56%)
Frame = -2
Query: 315 ICYHLIYRSCVNLSPSIINTWLQTFW*RFYNFQRIISCWAS 193
+C+ L+YR+ + ++ +L + + F R+ SC++S
Sbjct: 59 LCFFLVYRTTYSFGVCLMKRFLFNKFFNRHPFTRVKSCFSS 99
>SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 475
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 364 HIMHNFQGDFYGSNLKIALIGYLRGEKNF 450
H+M +GD+ L++A G+L G+ +F
Sbjct: 277 HLMIPTKGDYVRQTLELAGFGFLPGDASF 305
>SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 522
Score = 25.4 bits (53), Expect = 5.6
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -3
Query: 542 LRRLCAEGCFKFCSEFFISSRICSMRASRQLKFFSPLRYPIRAIFK 405
L + C F FC+ F S+ +C M A R LR+ + IF+
Sbjct: 135 LMQKCRLSYFIFCNVFLWSAMVCLMAACRNGPSLLGLRF-LAGIFE 179
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 90 SHENIFSIEENVISSAFFP*RRGS 161
SH+N +S+ E +S FF RG+
Sbjct: 150 SHQNSYSLNETYLSYDFFDNHRGA 173
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 25.0 bits (52), Expect = 7.4
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 245 PFGKDFTTSKG*LAVGHPSSLEPLPKPLTTSPSRKK 138
P+G + S V S EP+ PLT+ P+ KK
Sbjct: 639 PYGNNPLFSSTTSQVAPTSIQEPIASPLTSKPTPKK 674
>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +1
Query: 436 GEKNFNCLDALIEQIREDIKNSEQNLKQPSAQSLRNHS 549
G + CL+ + +++ E I+NS N +P ++N+S
Sbjct: 439 GNQTMKCLE-IHQELSELIRNSSTNYLEPVEVRMQNYS 475
>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 794
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/42 (23%), Positives = 20/42 (47%)
Frame = +1
Query: 253 PGVYYGWAQVDTGPVYEMVANIGWCPFYQNKEMSVETHIMHN 378
PGV+ G + TG + + ++ CP +++ I+ N
Sbjct: 80 PGVFEGIVNLTTGKIEKWEHSVDTCPIITADLLAITDEIVRN 121
>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 843
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/33 (27%), Positives = 18/33 (54%)
Frame = -1
Query: 391 NHPGNCALYGFQQTSLYFGKKDTILYLLPSHIQ 293
NH + ++ +Y +KD I +L+PS ++
Sbjct: 275 NHTAGLDIAFYENRDIYHTRKDDINHLMPSSLR 307
>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 24.6 bits (51), Expect = 9.8
Identities = 15/66 (22%), Positives = 24/66 (36%)
Frame = +1
Query: 331 FYQNKEMSVETHIMHNFQGDFYGSNLKIALIGYLRGEKNFNCLDALIEQIREDIKNSEQN 510
FY + HN+ D +N +A + N + I D+ S +
Sbjct: 81 FYPIARAKHSFYFNHNWSSDLQQANSPVASYSSQSVSNDSNFPKDVTSPISTDLSGSNPS 140
Query: 511 LKQPSA 528
LK PS+
Sbjct: 141 LKSPSS 146
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,350,698
Number of Sequences: 5004
Number of extensions: 52047
Number of successful extensions: 162
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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