Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18c16
         (591 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1340 + 32766773-32767582                                         87   7e-18
07_03_0525 - 19044978-19045508                                         29   2.1  
07_03_1198 + 24734985-24735169,24737897-24737975,24738070-247381...    29   3.7  
12_01_0151 - 1158834-1159703,1159917-1160092,1160144-1162097,116...    28   4.8  
11_06_0573 + 25088921-25089035,25089752-25089843,25089990-25091672     28   6.4  
11_05_0078 - 18906900-18907082,18907104-18907337,18907429-189076...    28   6.4  
01_04_0088 + 15930755-15931174,15931262-15931321                       27   8.5  

>04_04_1340 + 32766773-32767582
          Length = 269

 Score = 87.4 bits (207), Expect = 7e-18
 Identities = 47/89 (52%), Positives = 61/89 (68%), Gaps = 2/89 (2%)
 Frame = +2

Query: 323 MSGK-DRLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMG 499
           MSG+  RL + P+     ++K RL GA +GH LLKKK+DAL V+FR IL KI+  K  MG
Sbjct: 1   MSGQTQRLNVVPTVTMLGVMKARLVGATRGHALLKKKSDALTVQFRAILKKIVAAKESMG 60

Query: 500 EVMKEAAFSLAEAKFTTGD-FNQVVLQNV 583
           E M+ ++FSLAEAK+  GD    VVLQ+V
Sbjct: 61  EAMRASSFSLAEAKYVAGDGVRHVVLQSV 89


>07_03_0525 - 19044978-19045508
          Length = 176

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
 Frame = +2

Query: 389 LAGAVKGHGLLKKKADALQVRFRM--ILSKIIETKTLMG-EVMKEAAFSLA 532
           LAGA  G G +KK+A  ++VR R+  I+S I  T  L   +V+K + F +A
Sbjct: 110 LAGAGAGDGPVKKRAVRVRVRDRVGKIMSSISRTIHLTSRDVVKHSGFRVA 160


>07_03_1198 +
           24734985-24735169,24737897-24737975,24738070-24738134,
           24738214-24738313,24738429-24738470,24739062-24739100,
           24739140-24739330,24739745-24739850
          Length = 268

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/62 (27%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
 Frame = +2

Query: 410 HGLLKKKADALQVRFRMILSKIIETKTL--MGEVMKEAAFSLAEAKFTTGDFNQVVLQNV 583
           +G+LK K DALQ   R +L + ++T T+  + ++  +  +SL   K      NQ++ +++
Sbjct: 95  YGILKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSL---KHIRSKKNQLLFESI 151

Query: 584 TK 589
           ++
Sbjct: 152 SE 153


>12_01_0151 -
           1158834-1159703,1159917-1160092,1160144-1162097,
           1162360-1162620,1162729-1162916,1164127-1164166
          Length = 1162

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +2

Query: 323 MSGKDRLAIFPSRGAQML--IKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLM 496
           M  K +LA+F  + A  +  IK R A  V+  G +    +A+ +   +  +KII   +L+
Sbjct: 95  MRTKPKLAMFQLKMANKIKTIKNRFAAIVEQRGDVNTILNAIPIDHNVHKNKIISEPSLL 154

Query: 497 GEV 505
           G V
Sbjct: 155 GNV 157


>11_06_0573 + 25088921-25089035,25089752-25089843,25089990-25091672
          Length = 629

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 323 MSGKDRLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQV 448
           +   DRLAI P   + +   G L  +V+G G+  +K  +L V
Sbjct: 153 LGADDRLAIVPFHSSVVDATGLLEMSVEGRGVASRKVQSLAV 194


>11_05_0078 -
           18906900-18907082,18907104-18907337,18907429-18907653,
           18907739-18907909,18907994-18908109,18908215-18908369,
           18908450-18908573,18909007-18909107,18909215-18909297,
           18909383-18909607,18909694-18909810,18910488-18910640
          Length = 628

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 182 FKYPHNSQITRPSIDTILSFV 244
           F+YPH S + RPS D  ++F+
Sbjct: 144 FQYPHTSSVHRPSKDEDIAFM 164


>01_04_0088 + 15930755-15931174,15931262-15931321
          Length = 159

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 490 GFSLNDFAQDHTEPHLKGISLLLEETMAFHCT 395
           G +  DF   H +PH     LL ++  +F CT
Sbjct: 103 GLTAGDFILGHAKPHKSWKKLLYKDEQSFVCT 134


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,589,257
Number of Sequences: 37544
Number of extensions: 269579
Number of successful extensions: 533
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)