Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18c16
         (591 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z27080-1|CAA81600.1|  257|Caenorhabditis elegans Hypothetical pr...   131   3e-31
AC092690-2|AAK73855.2|  745|Caenorhabditis elegans Hypothetical ...    29   2.5  
U23523-11|AAP68942.2|  324|Caenorhabditis elegans Troponin t pro...    29   3.3  
U23523-10|AAP68941.1|  428|Caenorhabditis elegans Troponin t pro...    29   3.3  
AC006761-3|AAL32244.2|  860|Caenorhabditis elegans Hypothetical ...    27   10.0 

>Z27080-1|CAA81600.1|  257|Caenorhabditis elegans Hypothetical
           protein F55H2.2 protein.
          Length = 257

 Score =  131 bits (317), Expect = 3e-31
 Identities = 64/87 (73%), Positives = 73/87 (83%)
 Frame = +2

Query: 329 GKDRLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGEVM 508
           GKDR+A+FPSR AQ L+K RL GA KGH LLKKKADAL +RFR IL KI+E K LMGEVM
Sbjct: 5   GKDRIAVFPSRMAQTLMKTRLKGAQKGHSLLKKKADALNLRFRDILRKIVENKVLMGEVM 64

Query: 509 KEAAFSLAEAKFTTGDFNQVVLQNVTK 589
           KEAAFSLAEAKFT GDF+  V+QNV++
Sbjct: 65  KEAAFSLAEAKFTAGDFSHTVIQNVSQ 91


>AC092690-2|AAK73855.2|  745|Caenorhabditis elegans Hypothetical
           protein BE0003N10.1 protein.
          Length = 745

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 553 SSCELSFSQRESSFFHHFTHKGFSLNDF 470
           S  +L  SQR+ SF  H+   GF++N+F
Sbjct: 386 SVAQLLGSQRKKSFMLHYEFPGFAINEF 413


>U23523-11|AAP68942.2|  324|Caenorhabditis elegans Troponin t
           protein 2, isoform b protein.
          Length = 324

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +2

Query: 356 SRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGEVMKE 514
           ++G Q    G LA   K  GL K++ +  +  F  ++ K  +  TLM   +KE
Sbjct: 87  NKGDQAANFGNLAQGAKAEGLTKEQQEDAKRAFLNVVCKAQDVSTLMPNDLKE 139


>U23523-10|AAP68941.1|  428|Caenorhabditis elegans Troponin t
           protein 2, isoform a protein.
          Length = 428

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +2

Query: 356 SRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGEVMKE 514
           ++G Q    G LA   K  GL K++ +  +  F  ++ K  +  TLM   +KE
Sbjct: 191 NKGDQAANFGNLAQGAKAEGLTKEQQEDAKRAFLNVVCKAQDVSTLMPNDLKE 243


>AC006761-3|AAL32244.2|  860|Caenorhabditis elegans Hypothetical
           protein Y41G9A.4b protein.
          Length = 860

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = +2

Query: 404 KGHGLLKKKADALQVRFRMILSKIIETKTLMGEVMKEAAFSLAEAKFTTGDFNQVVLQNV 583
           K + +LKK+ + LQ++      KI E K  + E+ K +      A+    +  Q+  +N+
Sbjct: 756 KRYDMLKKENETLQIQIEEKERKIHECKERLEELTKNSETEDMNAQLLCENDKQIADENL 815

Query: 584 T 586
           T
Sbjct: 816 T 816


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,130,953
Number of Sequences: 27780
Number of extensions: 246811
Number of successful extensions: 469
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)