Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18c14
         (567 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016423-3|AAB65322.1|  221|Caenorhabditis elegans Hypothetical ...   188   3e-48
AF016423-4|AAX88829.1|  185|Caenorhabditis elegans Hypothetical ...   186   7e-48
AL034365-5|CAA22258.1|  172|Caenorhabditis elegans Hypothetical ...    83   1e-16
AC024756-2|AAK29884.1|  413|Caenorhabditis elegans Hypothetical ...    46   3e-05
Z79603-10|CAI79233.1|  224|Caenorhabditis elegans Hypothetical p...    33   0.14 
U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily ass...    31   0.58 
U23177-2|AAA64331.2|  538|Caenorhabditis elegans Hypothetical pr...    30   1.3  
AL132876-15|CAD21668.2|  722|Caenorhabditis elegans Hypothetical...    30   1.3  
AB096636-1|BAC76736.1|  722|Caenorhabditis elegans tyrosyl-tRNA ...    30   1.3  
U39999-7|AAY44012.1|  232|Caenorhabditis elegans Hypothetical pr...    29   1.8  
AC024881-2|AAK71414.1|  274|Caenorhabditis elegans Serpentine re...    29   1.8  
U39999-8|AAY44011.1|  146|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AF067217-2|AAF99977.1| 1887|Caenorhabditis elegans Heavy chain, ...    29   3.1  
AF038618-9|AAB92066.1|  304|Caenorhabditis elegans Hypothetical ...    27   7.1  
AC006625-4|AAK68276.1|  446|Caenorhabditis elegans Hypothetical ...    27   7.1  

>AF016423-3|AAB65322.1|  221|Caenorhabditis elegans Hypothetical
           protein F40A3.3a protein.
          Length = 221

 Score =  188 bits (457), Expect = 3e-48
 Identities = 82/134 (61%), Positives = 105/134 (78%), Gaps = 2/134 (1%)
 Frame = +2

Query: 146 RAMSTVA-KSFEASQVVPDVIPK-APAALLQVKYPSGVEVKEGNELTPTQVKDEPSVKWD 319
           R ++T+A ++F   +V+PDV+    P+ ++ VK+ SGVE   GN LTPTQVKD P VKWD
Sbjct: 32  RGLATMAAEAFTKHEVIPDVLASNPPSKVVSVKFNSGVEANLGNVLTPTQVKDTPEVKWD 91

Query: 320 AEPGQYYTLAMTDPDAPSRKEPTFREWHHWLVGNIQGNEVNSGETLSQYVGSGPPEKTGL 499
           AEPG  YTL  TDPDAPSRKEPT+REWHHWLV NI GN++  G+TLS+Y+G+GPP KTGL
Sbjct: 92  AEPGALYTLIKTDPDAPSRKEPTYREWHHWLVVNIPGNDIAKGDTLSEYIGAGPPPKTGL 151

Query: 500 HRYVFLLYKQPSKL 541
           HRYV+L+YKQ  ++
Sbjct: 152 HRYVYLIYKQSGRI 165


>AF016423-4|AAX88829.1|  185|Caenorhabditis elegans Hypothetical
           protein F40A3.3b protein.
          Length = 185

 Score =  186 bits (454), Expect = 7e-48
 Identities = 80/127 (62%), Positives = 100/127 (78%), Gaps = 1/127 (0%)
 Frame = +2

Query: 164 AKSFEASQVVPDVIPK-APAALLQVKYPSGVEVKEGNELTPTQVKDEPSVKWDAEPGQYY 340
           A++F   +V+PDV+    P+ ++ VK+ SGVE   GN LTPTQVKD P VKWDAEPG  Y
Sbjct: 3   AEAFTKHEVIPDVLASNPPSKVVSVKFNSGVEANLGNVLTPTQVKDTPEVKWDAEPGALY 62

Query: 341 TLAMTDPDAPSRKEPTFREWHHWLVGNIQGNEVNSGETLSQYVGSGPPEKTGLHRYVFLL 520
           TL  TDPDAPSRKEPT+REWHHWLV NI GN++  G+TLS+Y+G+GPP KTGLHRYV+L+
Sbjct: 63  TLIKTDPDAPSRKEPTYREWHHWLVVNIPGNDIAKGDTLSEYIGAGPPPKTGLHRYVYLI 122

Query: 521 YKQPSKL 541
           YKQ  ++
Sbjct: 123 YKQSGRI 129


>AL034365-5|CAA22258.1|  172|Caenorhabditis elegans Hypothetical
           protein Y69E1A.5 protein.
          Length = 172

 Score = 83.4 bits (197), Expect = 1e-16
 Identities = 45/136 (33%), Positives = 71/136 (52%), Gaps = 7/136 (5%)
 Frame = +2

Query: 152 MSTVAKSFEASQVVPDVIPKAPAALLQVKYPSGVEVKEGNELTPTQVKDEPSVKW---DA 322
           MS ++ +F   ++ P +I  AP   L + +  G++V+ G  +    +K+ P  +W    A
Sbjct: 1   MSDISAAFAQHEITPKIIENAPKQKLHLCW-DGIQVEPGMTMQVRNLKNAP--RWALPGA 57

Query: 323 EPGQYYTLAMTDPDAPSRKEPTFREWHHWLVGNIQGNE----VNSGETLSQYVGSGPPEK 490
           +P   YT+ M DPD  SRK P+  EW HWLV NI  +     +N G+    Y    P  +
Sbjct: 58  DPESIYTVLMIDPDNLSRKNPSVAEWLHWLVCNIPASNIIDGINGGQHQMAYGSPAPGPR 117

Query: 491 TGLHRYVFLLYKQPSK 538
           T LHRYV L+++   +
Sbjct: 118 TDLHRYVILMWEHAGR 133


>AC024756-2|AAK29884.1|  413|Caenorhabditis elegans Hypothetical
           protein Y34D9A.1 protein.
          Length = 413

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 3/110 (2%)
 Frame = +2

Query: 227 LQVKYPSGVEVKEGNELTPTQVKDEPSVKWDA--EPGQYYTLAMTDPDAPSRKEPTFREW 400
           LQV + + + V  GN +T       P +  ++    G + TL M + D  +       E 
Sbjct: 157 LQVNFENDIVVHSGNVITANSTLKRPEITIESVGNGGGFNTLLMINLDGNALDLGKNGEI 216

Query: 401 HHWLVGNI-QGNEVNSGETLSQYVGSGPPEKTGLHRYVFLLYKQPSKLTF 547
             W++ NI  G  +++G  +  Y+   P   TG HR  F+L++    + F
Sbjct: 217 VQWMISNIPDGEAISAGSEIIDYLQPLPFYGTGYHRVAFVLFRHEKPVDF 266


>Z79603-10|CAI79233.1|  224|Caenorhabditis elegans Hypothetical
           protein M163.11 protein.
          Length = 224

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 456 CPSTWALDLRKRQACTDTCSSCTNNHRSSHSTSRDS 563
           C ST+    +K Q C  TCS C+++  SS S+S  S
Sbjct: 18  CTSTFYTTAQKTQYCASTCSLCSDSSDSSSSSSTAS 53



 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 456 CPSTWALDLRKRQACTDTCSSCTNNHRSSHSTSRDS 563
           C S++     K Q C  TCS C+++  SS S+S  S
Sbjct: 147 CTSSFYTTAIKTQYCAATCSLCSSSSDSSSSSSTAS 182


>U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 152, isoform a protein.
          Length = 2560

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
 Frame = -1

Query: 543 VSFDGCLYKRNTYLCRPVFSGG-PEPTYWDKVSPEFTSLPWMLPTSQWCHSRNVGSLRDG 367
           V F  CL K     CRP  SGG P PTY D  S      P    T+Q    + VG++ +G
Sbjct: 6   VHFILCLTKY--IFCRPHTSGGAPNPTYSD-ASTTLLKYPLAAGTNQNRRRQQVGTMNNG 62

Query: 366 --ASGSVMA 346
              +G  MA
Sbjct: 63  DPVAGGPMA 71


>U23177-2|AAA64331.2|  538|Caenorhabditis elegans Hypothetical
           protein C56G2.4 protein.
          Length = 538

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = +2

Query: 404 HWLVGNIQGNEVNS----GETLSQYVGSGPPEKTGLHRYVFLLYKQPSKL 541
           HWL  +I    +N+    G T + YV   P + +  H Y+F+L  QP+ +
Sbjct: 375 HWLEVDIPAANLNAANGNGLTKADYVPLIPKKPSTCHSYLFVLLAQPASM 424


>AL132876-15|CAD21668.2|  722|Caenorhabditis elegans Hypothetical
           protein Y105E8A.19 protein.
          Length = 722

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
 Frame = +2

Query: 269 NELTPTQVKDEPSVKWDA-EPGQYYTLAMTDPDAPSRKEPTF----REWHHWLVGNIQGN 433
           N L   +V+ +  V  DA E G  ++   T+P  P  + P       E   W    + GN
Sbjct: 324 NLLEKVRVRCDTDVVRDAKEKGYNHSTDSTEPAIPPSEAPKIPSLSSEQKQWKDQLLNGN 383

Query: 434 EVNSGETLSQYVGSGPPEKTGLHRYVFLLYKQPSKLTF 547
           E+  GE L + +    P+K  LH    L++  P K  F
Sbjct: 384 EILIGEELDRVLADVSPQKP-LH----LMFIAPGKGRF 416


>AB096636-1|BAC76736.1|  722|Caenorhabditis elegans tyrosyl-tRNA
           synthetase (cytoplasmic)protein.
          Length = 722

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
 Frame = +2

Query: 269 NELTPTQVKDEPSVKWDA-EPGQYYTLAMTDPDAPSRKEPTF----REWHHWLVGNIQGN 433
           N L   +V+ +  V  DA E G  ++   T+P  P  + P       E   W    + GN
Sbjct: 324 NLLEKVRVRCDTDVVRDAKEKGYNHSTDSTEPAIPPSEAPKIPSLSSEQKQWKDQLLNGN 383

Query: 434 EVNSGETLSQYVGSGPPEKTGLHRYVFLLYKQPSKLTF 547
           E+  GE L + +    P+K  LH    L++  P K  F
Sbjct: 384 EILIGEELDRVLADVSPQKP-LH----LMFIAPGKGRF 416


>U39999-7|AAY44012.1|  232|Caenorhabditis elegans Hypothetical
           protein F41G3.20 protein.
          Length = 232

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 447 AKLCPSTWALDLRKRQACTDTCSSCTNNHRSSHSTS 554
           A  C ++  L L K+Q C  TC  CT++  SS S+S
Sbjct: 155 ASYCTNSAYLTLMKQQ-CPKTCGYCTSSSSSSSSSS 189


>AC024881-2|AAK71414.1|  274|Caenorhabditis elegans Serpentine
           receptor, class sx protein7 protein.
          Length = 274

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 530 VVCTRGTRICAGLSFPEVQSPRT 462
           ++C  GT +  GL+FP++Q  RT
Sbjct: 58  IICLLGTMVDVGLAFPDIQLDRT 80


>U39999-8|AAY44011.1|  146|Caenorhabditis elegans Hypothetical
           protein F41G3.19 protein.
          Length = 146

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 447 AKLCPSTWALDLRKRQACTDTCSSCTNNHRSSHSTSRDS 563
           A  C ++  L L K Q C  TC  CT++  +S +TS  S
Sbjct: 64  ASYCTNSVYLTLMKTQ-CPKTCGYCTSSSSTSSTTSSSS 101


>AF067217-2|AAF99977.1| 1887|Caenorhabditis elegans Heavy chain,
            unconventional myosinprotein 7 protein.
          Length = 1887

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +2

Query: 2    IASRSLIFGLISRHPFFLVCERQEMGALIRCAIVLLTVATMVNFRVLTRAMSTVAK 169
            +A   +IF L     F  V E ++MG  +RC  V++ +    N  VL R M  +A+
Sbjct: 1629 LAEPIIIFDLYEN--FLNVSEVEDMGERVRCLSVMIELLPKPNRAVLDRLMYHLAR 1682


>AF038618-9|AAB92066.1|  304|Caenorhabditis elegans Hypothetical
           protein F42G8.5 protein.
          Length = 304

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
 Frame = +2

Query: 149 AMSTVAKSFEASQVVPDVIPKAPAALLQVKYPSGVEVKEG-NELTPTQVKDEPSVKWDAE 325
           AMS V K  +  ++ P VIP      L  + P+ + V    N L  T V    S   D  
Sbjct: 188 AMSNVVKPHDEKKLYPPVIPGCSTLSLHRRSPNNIFVASPYNTLRATSVGRYQSGFLDTN 247

Query: 326 PGQYYTLAMTDPDAPSRKE 382
                 L    P   SR++
Sbjct: 248 SIMENRLGSRQPSVASRRQ 266


>AC006625-4|AAK68276.1|  446|Caenorhabditis elegans Hypothetical
           protein C55B7.5 protein.
          Length = 446

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 549 SNVSFDGCLYKRNTYLCRPVFSGGPEPTYWDKVSPEF 439
           S ++F G + ++N Y C P  S  P P   +K   +F
Sbjct: 403 STMTFPGEIVEKNPYECEPSTSRDPAPVITEKKVSKF 439


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,004,829
Number of Sequences: 27780
Number of extensions: 322207
Number of successful extensions: 930
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)