Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18c09
         (555 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0231 - 28547468-28547636,28547767-28547839,28548382-285484...    27   0.17 
04_04_0418 + 25077748-25078101,25079413-25079538,25080683-250815...    30   1.1  
12_02_1013 + 25305531-25305611,25305793-25305861,25306115-253062...    29   2.5  
03_06_0681 - 35512161-35512753,35512882-35513380                       28   5.8  
03_01_0225 + 1784211-1784324,1784398-1784668,1784992-1785248,178...    28   5.8  

>05_07_0231 -
           28547468-28547636,28547767-28547839,28548382-28548463,
           28548880-28548970,28549042-28549118,28549493-28549534,
           28550101-28550108,28550404-28550534,28551358-28551385,
           28551580-28551689,28551843-28551988,28552670-28552711,
           28552824-28552832,28552888-28553032,28553596-28553687
          Length = 414

 Score = 27.5 bits (58), Expect(2) = 0.17
 Identities = 9/36 (25%), Positives = 21/36 (58%)
 Frame = -1

Query: 492 RVIYQPHNYIXDEGLNTGVIGRKVKHHACPDQPKHK 385
           ++++   NY+ D GL   ++ R ++  +C   PK++
Sbjct: 96  KLLFTYENYVDDAGLAHNLLSRMLQVRSCAYHPKYR 131



 Score = 24.2 bits (50), Expect(2) = 0.17
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 540 DPFLDHXENLPAAVMLRVIYQPH 472
           + + DH  N+ + VML+ +  PH
Sbjct: 51  EDYFDHAGNMTSRVMLKPLEDPH 73


>04_04_0418 +
           25077748-25078101,25079413-25079538,25080683-25081593,
           25081970-25082453
          Length = 624

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
 Frame = +1

Query: 226 WMRILELQKYFIGIYIMLIA-SLGI--MVVAFLGCGSALMENVTLLYGYIGSQLALFVFG 396
           W+++     Y   +Y   I  +LG     +  LG  + + ENV L+ G + ++L  ++  
Sbjct: 31  WVQVAAGSAYVFPLYSHAIKEALGYNQKALTMLGVANDVGENVGLVPGVLANRLPPWLIL 90

Query: 397 LIG-ACVVLDFST 432
           LIG AC +L F T
Sbjct: 91  LIGSACALLGFGT 103


>12_02_1013 +
           25305531-25305611,25305793-25305861,25306115-25306208,
           25306292-25306396,25306577-25306660,25306793-25306866,
           25307936-25308001,25308892-25308948,25309433-25309477,
           25309602-25309655,25310097-25310237
          Length = 289

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 16/58 (27%), Positives = 33/58 (56%)
 Frame = +1

Query: 232 RILELQKYFIGIYIMLIASLGIMVVAFLGCGSALMENVTLLYGYIGSQLALFVFGLIG 405
           R+L +Q + + ++     SLG++ V + GC +   +   +  GY+G++ A+F   L+G
Sbjct: 17  RVLSIQSHTVQVF-----SLGLLWVCYSGCDNVCGK---MKDGYVGNKSAVFPLQLLG 66


>03_06_0681 - 35512161-35512753,35512882-35513380
          Length = 363

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = -3

Query: 415 PRMPRSAQTQTKLTVTQCNRIKVLRFPSVPTRI 317
           P+ P++  + T LTV+ C+ IKVL  PS+  R+
Sbjct: 310 PKGPQAYSSLTSLTVSYCSGIKVLP-PSLQQRL 341


>03_01_0225 +
           1784211-1784324,1784398-1784668,1784992-1785248,
           1785338-1785450,1791599-1791746,1791943-1792080,
           1792448-1792525
          Length = 372

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 19/71 (26%), Positives = 31/71 (43%)
 Frame = +1

Query: 268 YIMLIASLGIMVVAFLGCGSALMENVTLLYGYIGSQLALFVFGLIGACVVLDFSTYDSSI 447
           YI L  S     V+  GCG  L  + ++++G     L L  +GL+   + L         
Sbjct: 99  YIKLTGSEAFCPVSGGGCGDVLQSDYSVVFGIPLPLLGLVAYGLV---LTLSLQENGKKF 155

Query: 448 QPLIXNVIVRL 480
            P I ++ +RL
Sbjct: 156 LPGIDDLDIRL 166


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,626,754
Number of Sequences: 37544
Number of extensions: 361190
Number of successful extensions: 899
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)