Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt18c09
(555 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68880-6|CAA93092.1| 308|Caenorhabditis elegans Hypothetical pr... 52 3e-07
Z81128-2|CAB03397.2| 232|Caenorhabditis elegans Hypothetical pr... 49 3e-06
Z69790-4|CAA93655.1| 282|Caenorhabditis elegans Hypothetical pr... 46 1e-05
U41028-2|AAA82355.1| 233|Caenorhabditis elegans Tetraspanin fam... 34 0.079
AL110487-3|CAB54426.1| 223|Caenorhabditis elegans Hypothetical ... 32 0.32
AL132948-5|CAC51071.1| 321|Caenorhabditis elegans Hypothetical ... 31 0.56
U28740-6|AAA68322.4| 317|Caenorhabditis elegans Tetraspanin fam... 30 0.97
Z68220-5|CAA92490.2| 282|Caenorhabditis elegans Hypothetical pr... 29 1.7
U55373-2|AAX88832.1| 349|Caenorhabditis elegans Serpentine rece... 29 1.7
Z70036-5|CAO78725.1| 712|Caenorhabditis elegans Hypothetical pr... 28 5.2
Z70036-4|CAO78724.1| 733|Caenorhabditis elegans Hypothetical pr... 28 5.2
Z70036-3|CAA93876.1| 757|Caenorhabditis elegans Hypothetical pr... 28 5.2
AC006744-1|AAF60506.2| 328|Caenorhabditis elegans Serpentine re... 28 5.2
Z81557-2|CAB04536.1| 354|Caenorhabditis elegans Hypothetical pr... 27 6.9
U39653-4|AAL56624.1| 649|Caenorhabditis elegans Prion-like-(q/n... 27 6.9
AF016443-12|AAC24279.2| 340|Caenorhabditis elegans Seven tm rec... 27 6.9
Z92824-4|CAB07307.2| 395|Caenorhabditis elegans B0413.2 protein. 27 9.1
>Z68880-6|CAA93092.1| 308|Caenorhabditis elegans Hypothetical
protein T14G10.6 protein.
Length = 308
Score = 52.0 bits (119), Expect = 3e-07
Identities = 41/152 (26%), Positives = 69/152 (45%), Gaps = 3/152 (1%)
Frame = +1
Query: 106 ESQIYC-IKYTLFCFNVVLWLFGVSVFALCLWICFEPGFNEWMRILELQKYFIGIYIMLI 282
ES+I C +KY++F FNV+ +L G + +W E M + Y + +LI
Sbjct: 31 ESEISCCVKYSVFSFNVIFFLLGFGLLLFGVWAQIEKNTFVNMLSKASKLYLDPTWPLLI 90
Query: 283 ASLGIMVVAFLGCGSALMENVTLLYGYIGSQLALFVFGLIGACVVLDF--STYDSSIQPL 456
++ F GC +L EN + L Y + L L + A V D+ I+ L
Sbjct: 91 VGFLTFIIGFSGCVGSLRENTSFLTFY-STLLGLLLIAEFSAGVFAYACRDQLDNYIRNL 149
Query: 457 IXNVIVRLINNPQHDGSREILXMVQEGIGCCG 552
+ +V+V ++P + ++ +QE CCG
Sbjct: 150 LNDVVVGYRDDPD---LQLLIDSMQETWMCCG 178
>Z81128-2|CAB03397.2| 232|Caenorhabditis elegans Hypothetical
protein T23D8.2 protein.
Length = 232
Score = 48.8 bits (111), Expect = 3e-06
Identities = 38/150 (25%), Positives = 71/150 (47%)
Frame = +1
Query: 103 LESQIYCIKYTLFCFNVVLWLFGVSVFALCLWICFEPGFNEWMRILELQKYFIGIYIMLI 282
+E + +KY LF N+VLW+ G+S+ + + + F+ + IL ++ I +++I
Sbjct: 2 VEGGVTIVKYLLFLANLVLWVGGLSL--IIVGSILQLKFDNVLDILGDERLATPILLLVI 59
Query: 283 ASLGIMVVAFLGCGSALMENVTLLYGYIGSQLALFVFGLIGACVVLDFSTYDSSIQPLIX 462
SL ++ FLGC A+ EN L + LAL + I A V++ ++ +DS +
Sbjct: 60 GSL-CTLLGFLGCCGAIRENYCLTVSF-AVLLALLITCEI-AAVIIGYALHDSFRLGIGN 116
Query: 463 NVIVRLINNPQHDGSREILXMVQEGIGCCG 552
+ ++ + G + CCG
Sbjct: 117 QLQTGMVRYHESRGVESAWDKTHQLFECCG 146
>Z69790-4|CAA93655.1| 282|Caenorhabditis elegans Hypothetical
protein F33C8.3 protein.
Length = 282
Score = 46.4 bits (105), Expect = 1e-05
Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 5/153 (3%)
Frame = +1
Query: 109 SQIYCIKYTLFCFNVVLWLFGVSVFALCLWICFEPGFNEWMRILELQK---YFIGIYIML 279
S + ++ F FN WL GV VF L +W+ F+P +++ + ++G +++
Sbjct: 3 SCVNALRIVTFLFNFAFWLSGVVVFGLGIWLLFDPAASDFFALHSTHPGAFRYVGWFLVG 62
Query: 280 IASLGIMVVAFLGCGSALMENVTLLYGYIGSQLALFVFGLIGACVVLDFSTYDSSIQPLI 459
++ I++V + GC A N L + L L F + A V L I+ +
Sbjct: 63 AGAI-IILVGYFGCIGAWKMNQCAL-AFFCCILILAFFLELAAAVTLFHK--QEHIKHYV 118
Query: 460 XNVIVRLINN--PQHDGSREILXMVQEGIGCCG 552
+ + I N ++ VQE CCG
Sbjct: 119 ESSMYDTIRNRYSSETAFKDAFDTVQEKFECCG 151
>U41028-2|AAA82355.1| 233|Caenorhabditis elegans Tetraspanin family
protein 9 protein.
Length = 233
Score = 33.9 bits (74), Expect = 0.079
Identities = 38/160 (23%), Positives = 70/160 (43%), Gaps = 15/160 (9%)
Frame = +1
Query: 121 CIKYTLFCFNVVLWLFGVSVFALCLWICFEPGF----NEWMR---------ILELQKYFI 261
CIK F N + +FG + LW + F ++++R + E+ +Y
Sbjct: 7 CIKLLFFVINFFICIFGALICGFSLWANLDKNFGSHLSDFVRQIEGIDQKLVNEIAEYQA 66
Query: 262 GIYIMLIASLGIMVVAFLGCGSALMENVTLLYGYIGSQLALFVFGLIGACV--VLDFSTY 435
++I++ + +V F GC A E+ LL +I + L L GA V + + +
Sbjct: 67 SLWILVAVGALLFLVGFFGCCGAGCESPVLLGLFIFIIVILTAVEL-GATVFAMTNREEF 125
Query: 436 DSSIQPLIXNVIVRLINNPQHDGSREILXMVQEGIGCCGA 555
SSIQ ++ ++ ++ R+ + +Q CCGA
Sbjct: 126 VSSIQQVLKK------SSATYE-LRKNIKPIQNVFQCCGA 158
>AL110487-3|CAB54426.1| 223|Caenorhabditis elegans Hypothetical
protein Y39E4B.4 protein.
Length = 223
Score = 31.9 bits (69), Expect = 0.32
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +1
Query: 136 LFCFNVVLWLFGVSVFALCLWICFEPGFNEWMR 234
LF N+ L G +V AL LWI F+ GF +R
Sbjct: 12 LFFLNLAQTLVGFTVIALTLWIRFDKGFESEIR 44
>AL132948-5|CAC51071.1| 321|Caenorhabditis elegans Hypothetical
protein Y39B6A.6 protein.
Length = 321
Score = 31.1 bits (67), Expect = 0.56
Identities = 34/153 (22%), Positives = 57/153 (37%), Gaps = 11/153 (7%)
Frame = +1
Query: 127 KYTLFCFNVVLWLFGVSVFALCLWICFEPGFNEWMR----------ILELQKYFIGIYIM 276
KY +F N+V + G + A+ +W+ + F ++ E F YI+
Sbjct: 58 KYGIFTANIVFLIVGGLLLAMGVWLRTDSRFRNFISERYRQAVQEAFWEAPTLFAFSYII 117
Query: 277 LIASLGIMVVAFLGCGSALMENVTLLYGYIGSQLALFVFGL-IGACVVLDFSTYDSSIQP 453
++ +MVVA LGC + L Y L V L G ++ D +
Sbjct: 118 IVLGAVMMVVAMLGCCGITGRSRPFLIIYSMVVFLLLVATLSCGIYLLYKKDGLDVELSD 177
Query: 454 LIXNVIVRLINNPQHDGSREILXMVQEGIGCCG 552
+ ++ P +E L +Q CCG
Sbjct: 178 ALNYMVQHYYQGP--GVVQESLDHLQTAFRCCG 208
>U28740-6|AAA68322.4| 317|Caenorhabditis elegans Tetraspanin family
protein 11 protein.
Length = 317
Score = 30.3 bits (65), Expect = 0.97
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 18/98 (18%)
Frame = +1
Query: 124 IKYTLFCFNVVLWLFGVSVFALCLWICFE--------------PGFNEWMRILELQKYFI 261
+K++LF FN+V L G+ + LW+ + G+++ + +L
Sbjct: 18 LKFSLFIFNLVFLLCGLICLGIGLWLVLDKYAIDNLAFATAKVQGYDQDAGLRDLATKPT 77
Query: 262 GI----YIMLIASLGIMVVAFLGCGSALMENVTLLYGY 363
+ Y++ + ++VVAFLGC A E LL Y
Sbjct: 78 AVRQFGYLLFVGGFIVIVVAFLGCCGAAKEWRPLLCCY 115
>Z68220-5|CAA92490.2| 282|Caenorhabditis elegans Hypothetical
protein T20D3.8 protein.
Length = 282
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 121 CIKYTLFCFNVVLWLFGVSVFALCLWICF 207
C+ T+FCF + ++ +S F+L L ICF
Sbjct: 215 CLSSTIFCFLSLFSIYCISDFSLELSICF 243
>U55373-2|AAX88832.1| 349|Caenorhabditis elegans Serpentine
receptor, class h protein76, isoform b protein.
Length = 349
Score = 29.5 bits (63), Expect = 1.7
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 2/99 (2%)
Frame = +1
Query: 115 IYCIKYTLF-CFNVVLWLFGVSVFALCLWICFEPGFNEWMRILELQK-YFIGIYIMLIAS 288
IY + +F C V LF F ++ F + R +ELQK +FIGI I ++
Sbjct: 213 IYMVSMLIFLCSTFVQLLF--YAFTCLRYLVFSKSSSFSKRTIELQKKFFIGILIQVLVP 270
Query: 289 LGIMVVAFLGCGSALMENVTLLYGYIGSQLALFVFGLIG 405
+V + C ++ N Y + + + VF G
Sbjct: 271 YAFIVPSVSYCCYSVYSN---YYNQMLNNFFVLVFNFYG 306
>Z70036-5|CAO78725.1| 712|Caenorhabditis elegans Hypothetical
protein T01B4.2c protein.
Length = 712
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 313 LGCGSALMENVTLLYGYIGSQLALFVFGLIG 405
L C + L T++YG IG L LFV + G
Sbjct: 225 LACKTNLGRVATIIYGLIGIPLMLFVLKIFG 255
>Z70036-4|CAO78724.1| 733|Caenorhabditis elegans Hypothetical
protein T01B4.2b protein.
Length = 733
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 313 LGCGSALMENVTLLYGYIGSQLALFVFGLIG 405
L C + L T++YG IG L LFV + G
Sbjct: 246 LACKTNLGRVATIIYGLIGIPLMLFVLKIFG 276
>Z70036-3|CAA93876.1| 757|Caenorhabditis elegans Hypothetical
protein T01B4.2a protein.
Length = 757
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 313 LGCGSALMENVTLLYGYIGSQLALFVFGLIG 405
L C + L T++YG IG L LFV + G
Sbjct: 270 LACKTNLGRVATIIYGLIGIPLMLFVLKIFG 300
>AC006744-1|AAF60506.2| 328|Caenorhabditis elegans Serpentine
receptor, class t protein52 protein.
Length = 328
Score = 27.9 bits (59), Expect = 5.2
Identities = 22/93 (23%), Positives = 43/93 (46%)
Frame = +1
Query: 157 LWLFGVSVFALCLWICFEPGFNEWMRILELQKYFIGIYIMLIASLGIMVVAFLGCGSALM 336
L ++G SV A L+ C ++W L Q+ F+G+ I++I + I+ + ++ C A+
Sbjct: 4 LLIYG-SVQANPLYNCSAKPASQWTDELGTQRIFLGV-ILIIFGI-IVEILYVPCLGAIY 60
Query: 337 ENVTLLYGYIGSQLALFVFGLIGACVVLDFSTY 435
+ L + L + ++ C S Y
Sbjct: 61 KKKLLQHSCYKIMFLLGITDMLTTCTATILSGY 93
>Z81557-2|CAB04536.1| 354|Caenorhabditis elegans Hypothetical
protein F59A1.4 protein.
Length = 354
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +1
Query: 142 CFNVVLWLFGVSVFALCLWICFEPGFNEWMRILELQKYFIGIYIMLIASL-GIMVVAFLG 318
C +++ L + F L +C W++ E+ K+FI I I ++ L + FLG
Sbjct: 96 CSGIIISLLAIHFFYRYLAVCNNQA---WLQHFEMPKFFIWISIFVLFGLEWYLATLFLG 152
>U39653-4|AAL56624.1| 649|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 65,
isoform b protein.
Length = 649
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 303 GRVPRMRVGTDGKRNTFIRLHWVTVSFVCVWADR 404
GR+ D KR+ I H+ + VCVW D+
Sbjct: 188 GRIRATSYSCDIKRSGLISAHFASNDTVCVWNDQ 221
>AF016443-12|AAC24279.2| 340|Caenorhabditis elegans Seven tm
receptor protein 229 protein.
Length = 340
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 118 YCIKYTLFCFNVVLWLFGVSVFALCLWICFEPGF 219
+C +Y N W+ G+ V LC W+C P F
Sbjct: 111 FCFRYLTITKNN-RWVSGIPV--LCFWLCIPPFF 141
>Z92824-4|CAB07307.2| 395|Caenorhabditis elegans B0413.2 protein.
Length = 395
Score = 27.1 bits (57), Expect = 9.1
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 10/75 (13%)
Frame = +1
Query: 127 KYTLFCFNVVLWLFGVSVFALCLWICFEPGFNEWM----------RILELQKYFIGIYIM 276
KY +F N+V + G A+ +W+ + F ++ E F YI
Sbjct: 169 KYGIFTANIVFLIVGGLXLAMGVWLRTDSRFRNFISERYRQAVQEAFWEAPTXFAFSYIX 228
Query: 277 LIASLGIMVVAFLGC 321
++ +MVVA GC
Sbjct: 229 IVLGAVMMVVAMXGC 243
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,931,352
Number of Sequences: 27780
Number of extensions: 305444
Number of successful extensions: 927
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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