Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18c02
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.03c |||THIJ/PFPI family peptidase |Schizosaccharomyces...    71   2e-13
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    27   2.2  
SPCC18.10 |||pyridoxine-pyridoxal-pyridoxamine kinase|Schizosacc...    26   3.8  
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo...    26   5.1  
SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual        26   5.1  
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo...    26   5.1  
SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc...    26   5.1  

>SPAC22E12.03c |||THIJ/PFPI family peptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 191

 Score = 70.5 bits (165), Expect = 2e-13
 Identities = 49/170 (28%), Positives = 86/170 (50%), Gaps = 6/170 (3%)
 Frame = +3

Query: 117 VILAQGAEEMETVITVDMLRRGGVTV--TLAGLEGSSPVLCSRQVTLVPDKSLTEALAEK 290
           + +A G +E+E      + +R  + +     G      V  SR V +  ++S  E  +  
Sbjct: 6   LFVADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSAD 65

Query: 291 ---QQYDAVILPGGLEGSDSLSKSEKVGALLKD-HEDNGKXXXXXXXXXXXXXXHGVARG 458
              +QYD  I+PGG  G+ +LS +  V  ++K+ ++   K               G+   
Sbjct: 66  DFAKQYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMICAGTLTAKTSGLPN- 124

Query: 459 RRVTSYPSTRDKLSAGDYTYVEGERVVVDGNVVTSRGPGTAYWFGLTLIE 608
           +++T +PS R +L  G Y Y++ + VV++ N++TS+GPGTA  FGL L+E
Sbjct: 125 KQITGHPSVRGQLEEGGYKYLD-QPVVLEENLITSQGPGTAMLFGLKLLE 173


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -2

Query: 310 ITASYC-CFSARASVSDLSGTRVTCLEHSTGDEPSKPARVTV 188
           +  ++C  F+  AS+ + +GT+  CL H     P+  + +TV
Sbjct: 714 MACAFCKTFAYLASIEEKNGTKTACLSHKDECFPNTDSDLTV 755


>SPCC18.10 |||pyridoxine-pyridoxal-pyridoxamine
           kinase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 340

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +3

Query: 234 SRQVTLVPDKSLTEALAEKQQYDAVILPGGLEGSD 338
           +R++ L+  +S T  L++K  Y+A  LPG  EG D
Sbjct: 307 ARELRLI--QSRTALLSKKSIYEAEFLPGFEEGED 339


>SPBC11G11.02c |end3||actin cortical patch component End3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 375

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +3

Query: 252 VPDKSLTEALAEKQQYDAVILPGGLEGSDSLSKSEKVGALLKDHED 389
           VPD+ + EAL    +   V     L G+D ++   KV +L  D ED
Sbjct: 80  VPDR-VPEALVSTSKKHLVAARDALRGNDDIALLHKVPSLDTDPED 124


>SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 450

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 471 TSRAGPSPRRGLQTLWEQHKW 409
           T+ +G SP   L  LW+ H W
Sbjct: 41  TANSGMSPTHKLPALWDGHVW 61


>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/54 (25%), Positives = 21/54 (38%)
 Frame = -2

Query: 388 SSWSLSRAPTFSDLERLSDPSKPPGRITASYCCFSARASVSDLSGTRVTCLEHS 227
           SSWSLS + +    + LSD       +      F    S++  S +      HS
Sbjct: 68  SSWSLSSSDSIMSYDSLSDDVSVLSFLDCPLTTFETAPSIASFSNSAADVSSHS 121


>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -2

Query: 391 LSSWSLSRAPTFSDLERLSDPSKPPGRITASY 296
           L SW+  RA   +  + L  PSKP  R+ ASY
Sbjct: 400 LLSWAAIRAGGLA--KELFGPSKPTARVPASY 429


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,065,838
Number of Sequences: 5004
Number of extensions: 35944
Number of successful extensions: 104
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)