Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt18c02
(620 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0313 - 19475203-19475244,19475883-19475976,19476933-194771... 124 4e-29
01_01_0826 + 6431621-6431917,6432356-6432505,6432614-6432796,643... 103 2e-22
05_06_0103 + 25597531-25597608,25597692-25597892,25598599-255987... 87 1e-17
01_01_0824 + 6411899-6411931,6412001-6412210,6412302-6412451,641... 77 1e-14
04_04_1546 - 34301905-34302093,34302549-34302911,34303031-343034... 51 9e-07
02_01_0558 + 4109929-4110042,4110989-4111097,4111404-4111563,411... 30 1.7
01_04_0136 + 16506747-16506982,16507128-16507728,16510443-165108... 30 1.7
03_02_0695 + 10472174-10472286,10472390-10473239 29 2.3
04_04_1586 - 34621945-34623366 29 3.9
02_05_0230 + 27029725-27030871,27030995-27031113,27031225-270313... 28 6.9
04_04_0053 + 22389227-22389613,22390528-22390981,22391618-223916... 27 9.1
>06_03_0313 -
19475203-19475244,19475883-19475976,19476933-19477129,
19477254-19477394,19477873-19478073,19478775-19478894,
19479677-19479859,19479946-19480095,19481305-19481508,
19481545-19481547
Length = 444
Score = 124 bits (300), Expect = 4e-29
Identities = 70/170 (41%), Positives = 103/170 (60%), Gaps = 1/170 (0%)
Frame = +3
Query: 114 LVILAQGAEEMETVITVDMLRRGGVTVTLAGLEGSSPVLCSRQVTLVPDKSLTEALAEKQ 293
LV +A G EEME + +D+LRR V +A LE + ++ SR+V +V D L +AL KQ
Sbjct: 222 LVPIANGTEEMEATMIIDILRRAKANVVVASLEETLEIVASRKVKMVADVLLDDAL--KQ 279
Query: 294 QYDAVILPGGLEGSDSLSKSEK-VGALLKDHEDNGKXXXXXXXXXXXXXXHGVARGRRVT 470
QYD ++LPGGL G+ + +KS+K +G + K E N HG+ +G++ T
Sbjct: 280 QYDLILLPGGLGGAQAYAKSDKLIGLIKKQAEANKLYGAICASPAIALEPHGLLKGKKAT 339
Query: 471 SYPSTRDKLSAGDYTYVEGERVVVDGNVVTSRGPGTAYWFGLTLIELLTG 620
S+P +KLS D + + RVVVDGN++TS+GPGT+ F L ++E L G
Sbjct: 340 SFPGMWNKLS--DQSECK-NRVVVDGNLITSQGPGTSMEFSLAIVEKLFG 386
Score = 103 bits (246), Expect = 2e-22
Identities = 68/171 (39%), Positives = 96/171 (56%), Gaps = 2/171 (1%)
Frame = +3
Query: 114 LVILAQGAEEMETVITVDMLRRGGVTVTLAGLE-GSSPVLCSRQVTLVPDKSLTEALAEK 290
LV +A G E ME VITVD+LRR G V++A ++ GS+ V + V L D +L + LA+
Sbjct: 3 LVPIASGTEPMEAVITVDVLRRAGADVSVASVDPGSAQVGGAWGVKLAAD-ALLDDLADA 61
Query: 291 QQYDAVILPGGLEGSDSLSKSEKVGALLKDHEDNGKXXXXXXXXXXXXXXH-GVARGRRV 467
+ +D + LPGG+ GS +L + + ++K H GK G+ G +
Sbjct: 62 E-FDLISLPGGMPGSSNLRDCKLLENMVKKHAGKGKLYAAICAAPAVALGSWGLLNGLKA 120
Query: 468 TSYPSTRDKLSAGDYTYVEGERVVVDGNVVTSRGPGTAYWFGLTLIELLTG 620
T YPS DKL + + VE RV +DGN VTSRGPGTA + + L+E L G
Sbjct: 121 TCYPSFMDKLPS-EVNAVES-RVQIDGNCVTSRGPGTAMEYSVVLVEQLYG 169
>01_01_0826 +
6431621-6431917,6432356-6432505,6432614-6432796,
6433305-6433385,6433548-6433586,6433646-6433849,
6433933-6434073,6434270-6434437,6434498-6434518
Length = 427
Score = 103 bits (246), Expect = 2e-22
Identities = 62/171 (36%), Positives = 97/171 (56%), Gaps = 2/171 (1%)
Frame = +3
Query: 114 LVILAQGAEEMETVITVDMLRRGGVTVTLAGLEGSSPVLCSR-QVTLVPDKSLTEALAEK 290
LV +A G+EEME + +D+LRR G VT+A +E V+ R + L+ D + EA K
Sbjct: 252 LVPVANGSEEMEALNLIDILRRAGANVTVASVEDKLQVVTRRHKFNLIADIMVEEAA--K 309
Query: 291 QQYDAVILPGGLEGSDSLSKSEKVGALLKDH-EDNGKXXXXXXXXXXXXXXHGVARGRRV 467
+++D +++PGGL G+ LS ++ + LLK E N HG+ +G++
Sbjct: 310 REFDLIVMPGGLPGAQKLSSTKVLVDLLKKQAESNKPYGAICASPAYVLEPHGLLKGKKA 369
Query: 468 TSYPSTRDKLSAGDYTYVEGERVVVDGNVVTSRGPGTAYWFGLTLIELLTG 620
TS+P L+ D + + RVVVDGN++TS+ PG+A F L ++E L G
Sbjct: 370 TSFPPMAHLLT--DQSACDS-RVVVDGNLITSKAPGSATEFALAIVEKLFG 417
Score = 83.0 bits (196), Expect = 2e-16
Identities = 61/188 (32%), Positives = 89/188 (47%), Gaps = 7/188 (3%)
Frame = +3
Query: 78 RAFKSRTMS-KSALVILAQGAEEMETVITVDMLRRGGVTVTLAGLEGSSP-----VLCSR 239
RAF + K LV +A G E +E T D+L R G VT+A + + V +
Sbjct: 16 RAFAAAAAEPKRVLVPVADGTEPVEAAATADVLNRAGARVTVATADPAGDDRGLLVEAAF 75
Query: 240 QVTLVPDKSLTEALAEKQQYDAVILPGGLEGSDSLSKSEKVGALLKDHEDNGKXXXXXXX 419
V LV D + + E + +D + LPGG+ GS +L + + ++K + G
Sbjct: 76 GVKLVADGRVADL--EGEAFDLIALPGGMPGSANLRDCKVLEKMVKKQAEQGGLYAAICA 133
Query: 420 XXXXXXXH-GVARGRRVTSYPSTRDKLSAGDYTYVEGERVVVDGNVVTSRGPGTAYWFGL 596
H G+ +G + T YPS +K +A RVVVD N VTS+GP TA + L
Sbjct: 134 TPAVTLAHWGLLKGLKATCYPSFMEKFTAEIIPV--NSRVVVDRNAVTSQGPATAIEYAL 191
Query: 597 TLIELLTG 620
L+E L G
Sbjct: 192 ALVEQLYG 199
>05_06_0103 +
25597531-25597608,25597692-25597892,25598599-25598748,
25598906-25599019,25599699-25599776,25600008-25600208,
25601312-25601399,25601432-25601742
Length = 406
Score = 87.0 bits (206), Expect = 1e-17
Identities = 57/185 (30%), Positives = 97/185 (52%), Gaps = 16/185 (8%)
Frame = +3
Query: 114 LVILAQGAEEMETVITVDMLRRGGVTVTLAGLEGSSPVLCSRQVTLVPDKSLTEALAEKQ 293
L+ +A G+EEME ++ D+LRR V V LA +E S+ ++ S+++ +V DK +++A A
Sbjct: 209 LIPIANGSEEMEIIMLTDVLRRANVNVVLASVEKSTSIVGSQRMRIVADKCISDASA--L 266
Query: 294 QYDAVILPGGLEGSDSLSKSEKVGALLKDHEDNGKXXXXXXXXXXXXXXHG--------- 446
+YD +ILPGG G++ L KS + LLK+ + G+
Sbjct: 267 EYDLIILPGGPAGAERLHKSSVLKKLLKEQKQTGRMYEAGFTPGDILGLKTLGILYSLAW 326
Query: 447 -------VARGRRVTSYPSTRDKLSAGDYTYVEGERVVVDGNVVTSRGPGTAYWFGLTLI 605
V + + VT++PS ++L+ ++ +VV+DGN++T G GT F L +I
Sbjct: 327 KITAIEIVDQDKTVTAHPSIVNQLTC---EVIDRSKVVIDGNLITGMGLGTVIDFSLAII 383
Query: 606 ELLTG 620
+ G
Sbjct: 384 KKFFG 388
Score = 62.1 bits (144), Expect = 3e-10
Identities = 40/96 (41%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Frame = +3
Query: 69 ANYRAFKSRTMSKSALVI-LAQGAEEMETVITVDMLRRGGVTVTLAGLEGSSPVLCSRQV 245
A+ A S T +K +++ +A G EEME VI +LRR G VTLA +E V SR
Sbjct: 12 ASTAASSSTTPAKKKVLLPIAMGTEEMEAVILAGVLRRAGADVTLASVEDGLEVEASRGS 71
Query: 246 TLVPDKSLTEALAEKQQYDAVILPGGLEGSDSLSKS 353
+V DK + A Q +D V LPGG+ GS L S
Sbjct: 72 HIVADKRI--AACADQVFDLVALPGGMPGSVRLRDS 105
Score = 36.7 bits (81), Expect = 0.015
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = +3
Query: 528 ERVVVDGNVVTSRGPGTAYWFGLTLIELLTG 620
+R V G + TSRGPGTA+ F L+ +E L G
Sbjct: 140 KRKKVSGELTTSRGPGTAFQFALSFVEQLFG 170
>01_01_0824 +
6411899-6411931,6412001-6412210,6412302-6412451,
6413787-6413969,6417705-6417779,6417959-6418102,
6418233-6418418,6418515-6418694
Length = 386
Score = 77.0 bits (181), Expect = 1e-14
Identities = 52/173 (30%), Positives = 81/173 (46%), Gaps = 2/173 (1%)
Frame = +3
Query: 102 SKSALVILAQGAEEMETVITVDMLRRGGVTVTLAGLE-GSSPVLCSRQVTLVPDKSLTEA 278
+K LV + G E +E + +D+LRR G VT+A + G V V +V D +
Sbjct: 9 TKKVLVPIVAGTEPVEAAVPIDVLRRAGADVTVASADDGELVVEVMYGVRIVADALVAGG 68
Query: 279 LAEKQQYDAVILPGGLEGSDSLSKSEKVGALLKDHEDNGKXXXXXXXXXXXXXXH-GVAR 455
+D ++LPGG+ G+ +L + A+++ H G G+
Sbjct: 69 DCAAAHFDLIVLPGGVPGAANLGGCAALEAMVRRHAATGGLYAAICAAPPLALASWGMLN 128
Query: 456 GRRVTSYPSTRDKLSAGDYTYVEGERVVVDGNVVTSRGPGTAYWFGLTLIELL 614
G + T++P DK + V+ VVVD + VTSRGP T+ F L L+E L
Sbjct: 129 GLKATAHPLFVDKFPP-EVAAVDAS-VVVDASAVTSRGPATSTEFALALVEQL 179
Score = 65.3 bits (152), Expect = 4e-11
Identities = 53/171 (30%), Positives = 78/171 (45%), Gaps = 2/171 (1%)
Frame = +3
Query: 114 LVILAQGAEEMETVITVDMLRRGGVTVTLAGLEGSSPVLCSRQ-VTLVPDKSLTEALAEK 290
LV +A G EEME + +D+LRR V +A E + + +R + ++ ++ T + K
Sbjct: 219 LVPVANGTEEMELITIIDVLRRADADVVVASAENAGVEIVARHGMRIITERLNTFSPRLK 278
Query: 291 QQYDAVILPGGLEGSDSLSKSEKVGALLKDHEDNGKXXXXXXXXXXXXXX-HGVARGRRV 467
QQ GG G+ ++S +EK+ LLK K HG+ G++
Sbjct: 279 QQ-------GGTPGAKTMSSNEKLVTLLKKQAAASKPYGAIGAATAHVLEPHGLLEGKKA 331
Query: 468 TSYPSTRDKLSAGDYTYVEGERVVVDGNVVTSRGPGTAYWFGLTLIELLTG 620
GD RVVVDGNV+TS G GTA F + +E L G
Sbjct: 332 ADQ-------DGGDECE---SRVVVDGNVITSGGTGTAMEFAVAAVEKLLG 372
>04_04_1546 -
34301905-34302093,34302549-34302911,34303031-34303471,
34304331-34304447,34304540-34304593
Length = 387
Score = 50.8 bits (116), Expect = 9e-07
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Frame = +3
Query: 285 EKQQYDAVILPGGLEGSDSLSKSEKVGALLKDHEDNGKXXXXXXXXXXXXXXHGVARGRR 464
+ YDA+++PGG + L+ ++KV +L+K D K GV +GR+
Sbjct: 270 DASSYDALVIPGG-RAPEYLALNDKVISLVKGFMDKAKPVASICHGQQILSAAGVLQGRK 328
Query: 465 VTSYPSTRDKLSAGDYTYVEG---ERVVVDGNVVTSRG-PG 575
T+YP+ + + G T++E +R DGN+VT PG
Sbjct: 329 CTAYPAVKLNVVLGGATWLEPNPIDRCFTDGNLVTGAAWPG 369
>02_01_0558 +
4109929-4110042,4110989-4111097,4111404-4111563,
4111721-4111796,4111984-4112109,4112233-4112484
Length = 278
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +3
Query: 165 DMLRRGGVTVTLAGLEGSSPVLCSRQVTLVPD 260
DM+ RG ++ L L G SP L RQ VPD
Sbjct: 201 DMVARGALSCGLGHLGGLSPALNPRQACRVPD 232
>01_04_0136 +
16506747-16506982,16507128-16507728,16510443-16510842,
16513595-16513709,16513776-16514352
Length = 642
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +3
Query: 102 SKSALVILAQGAEEMETVITVDMLRRGG--VTVTLAGLEGSSPVLCSRQVTLVPDKSLT 272
+K A VI++ E ET+ V +L + ++ +L L+G SP LC+ + + + SL+
Sbjct: 528 NKEAPVIISDKLSEDETIRLVTVLEKHHSIMSCSLQDLKGISPALCTHCIPIELESSLS 586
>03_02_0695 + 10472174-10472286,10472390-10473239
Length = 320
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 495 LSAGDYTYVEGERVVVDGNVVTSR 566
L++ D Y+ G +VVDG V TSR
Sbjct: 292 LASDDSRYISGHNLVVDGGVTTSR 315
>04_04_1586 - 34621945-34623366
Length = 473
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 107 VCVSDFGAGCRGDGDSYNC*YAETRRGNSYS 199
+C + G GC G GD+ C Y+ T SY+
Sbjct: 189 ICRTLSGTGCGGGGDAGKCDYSVTYGDGSYT 219
>02_05_0230 +
27029725-27030871,27030995-27031113,27031225-27031349,
27031491-27031590,27031680-27031757,27032818-27032901,
27033077-27033162,27033869-27034049,27034596-27034646
Length = 656
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 183 GVTVTLAGLEGSSPVLCSRQVTLVPDKSLTEALAEKQQYDAVI 311
G T+ G GS+ LC+ +V + +AL+ +YD V+
Sbjct: 521 GQTLFCGGFAGSTAALCTTPFDVVKTRVQLQALSPISKYDGVL 563
>04_04_0053 +
22389227-22389613,22390528-22390981,22391618-22391673,
22391757-22391887,22391976-22392072,22393329-22393484
Length = 426
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 492 KLSAGDYTYVEGERVVVDGNVVTSRGPG 575
+L A Y V+G +V++D N SRG G
Sbjct: 215 ELFANKYRSVKGAKVIIDANTGRSRGYG 242
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,503,043
Number of Sequences: 37544
Number of extensions: 283568
Number of successful extensions: 1056
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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