Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18c01
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|ch...    27   2.2  
SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|c...    26   5.0  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    25   6.6  
SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2 |...    25   8.7  

>SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 257

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 531 IFIHIIPXGTPYILIPFIVIIETIRNI 611
           +F   +P GTP  LIP +V+IE +  I
Sbjct: 149 VFGLFLPSGTPTPLIPLLVLIEFVSYI 175


>SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 605 SDGFNNYYKWY*NIGCSXWNYMNKYVI 525
           +DG N+  + Y NI    WNY+   V+
Sbjct: 198 ADGRNSIVRKYANISMPGWNYLTHAVV 224


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 194 C*WIKNRK*VCY-HFQLKVNFFFWLNLLIRCIFFS 93
           C + KN+  +C  +FQ  +  F W++++ R + FS
Sbjct: 370 CPYGKNKTLICLLNFQSSLLSFEWISIISRALLFS 404


>SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 540 HIIPXGTPYILIPFIVIIETIRN 608
           H +P G PY  +P + +I+ IR+
Sbjct: 222 HEMPLGKPYFNMPLLTMIKGIRH 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,629,000
Number of Sequences: 5004
Number of extensions: 25803
Number of successful extensions: 48
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)