Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt18b24
(226 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces... 30 0.047
SPBC16A3.16 |||mitochondrial inner membrane protein involved in ... 27 0.44
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|... 26 0.77
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c... 25 1.3
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ... 25 1.3
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p... 24 2.4
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch... 24 2.4
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni... 24 2.4
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ... 24 2.4
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce... 24 3.1
SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr... 23 4.1
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo... 23 4.1
SPAC23H4.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 23 5.4
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c... 23 5.4
SPAC3C7.14c |obr1|apt1, uhp1|ubiquitinated histone-like protein ... 23 5.4
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 23 5.4
SPBC3H7.13 |||FHA domain protein Far10 |Schizosaccharomyces pomb... 23 7.2
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 23 7.2
SPAC1296.02 |cox4||cytochrome c oxidase subunit IV|Schizosacchar... 22 9.5
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr... 22 9.5
>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 662
Score = 29.9 bits (64), Expect = 0.047
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +2
Query: 23 YVTRLGTHSAAAQCDSHIHS-DVFMESLITV-AAAIPSNIFAVLGMDRLGRKFFLVFATF 196
Y+T ++ +QC + S V M + + IP I A+L + RLG ++FA F
Sbjct: 117 YITYRELLASVSQCAGALQSMGVGMGDRVAIYMPMIPETIIAMLAIVRLGAIHSVIFAGF 176
Query: 197 SAGS 208
SA S
Sbjct: 177 SAES 180
>SPBC16A3.16 |||mitochondrial inner membrane protein involved in
cytochrome c oxidase assembly Pet191
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 85
Score = 26.6 bits (56), Expect = 0.44
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = -1
Query: 214 RTRASRECCKHKEELPPE 161
+ +++REC K+K+ELP E
Sbjct: 25 KKKSARECLKNKDELPEE 42
>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 461
Score = 25.8 bits (54), Expect = 0.77
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -2
Query: 210 HEPAENVANTRKNFLPSLSMPRTAKMLEGMA 118
H P + R +FLP +S+P T + G +
Sbjct: 46 HAPMYGLGQRRPSFLPGVSVPDTLSVRSGFS 76
>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 453
Score = 25.0 bits (52), Expect = 1.3
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = +2
Query: 101 LITVAAAIPSNIFAVLGMDRLGRKFFLVFATFSAGS 208
L T AIP NIF +L +F SAGS
Sbjct: 141 LATFLTAIPPNIFILLVPKSFDTSMLNLFVAVSAGS 176
>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 528
Score = 25.0 bits (52), Expect = 1.3
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Frame = -1
Query: 211 TRASRECCKHKEELPPEPVHAEDREDVGGYGG--RDGDERLHED 86
T S KH + EP E+ + G GG + RLH D
Sbjct: 473 TSTSSTSSKHSTGISTEPTTGEENKQDGSVGGFFKRAFRRLHPD 516
>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 555
Score = 24.2 bits (50), Expect = 2.4
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +2
Query: 80 SDVFMESLITVAAAIPSNIFAVLGMDRLGRKFFLVFATFSAGSC 211
+D+F+ ++I A + A+ +D LGR+ L+F C
Sbjct: 298 TDIFLPAVILGAINFGTTFGALYTIDNLGRRNPLIFGAAFQSIC 341
>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 24.2 bits (50), Expect = 2.4
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +2
Query: 86 VFMESLITVAAAIPSNIFAVLGMDRLGRKFFLVFATFSAG-SCSAAMY 226
V ++S ++ ++ A L D + FFLV+ TF+ SC Y
Sbjct: 79 VMLKSRMSTQKVTKQSLGAQLFYDFSPKSFFLVYLTFAVSVSCLCLFY 126
>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1227
Score = 24.2 bits (50), Expect = 2.4
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = -1
Query: 184 HKEELPPEPV--HAEDREDVGGYGGRDGDERL 95
H E L P + H E+ E++GGY +G E+L
Sbjct: 203 HLEGLSPAELIAHKEESEEMGGYFIVNGIEKL 234
>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 24.2 bits (50), Expect = 2.4
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +2
Query: 80 SDVFMESLITVAAAIPSNIFAVLGMDRLGRKFFLVFATFSAGSC 211
+D+F+ ++I A + A+ +D LGR+ L+F C
Sbjct: 298 TDIFLPAVILGAINFGTTFGALYTIDNLGRRNPLIFGAAFQSIC 341
>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 403
Score = 23.8 bits (49), Expect = 3.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 204 PAENVANTRKNFLPSLSMPRTAK 136
P +VAN+++ L LS P TAK
Sbjct: 162 PTPSVANSQEYTLDKLSPPSTAK 184
>SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 473
Score = 23.4 bits (48), Expect = 4.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 124 TLQHLRGPRHGQAREEVL 177
+L L GP HG A +EVL
Sbjct: 301 SLNGLAGPLHGLANQEVL 318
>SPCC126.09 |||vacuolar membrane zinc transporter
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 418
Score = 23.4 bits (48), Expect = 4.1
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +2
Query: 8 CEVTAYVTRLGTHSAAAQCDSHIHS 82
CE A+ + THS HIHS
Sbjct: 237 CECHAHFSSFPTHSGTPDDIEHIHS 261
>SPAC23H4.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 97
Score = 23.0 bits (47), Expect = 5.4
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Frame = -1
Query: 214 RTRASRECCKHKEELPPEPVH---AEDREDVGGYGGRDGDERLHED 86
RT H + + P P+ A R GG+GG+ LH D
Sbjct: 26 RTPLCAPLFSHLDGMTPCPIDCGFAVGRSRGGGFGGKPESNSLHYD 71
>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 581
Score = 23.0 bits (47), Expect = 5.4
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +1
Query: 172 VLPCVCNILGWLVFG 216
+LPC+ N +G +FG
Sbjct: 430 ILPCIINPIGLFMFG 444
>SPAC3C7.14c |obr1|apt1, uhp1|ubiquitinated histone-like protein
Uhp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 202
Score = 23.0 bits (47), Expect = 5.4
Identities = 9/33 (27%), Positives = 13/33 (39%)
Frame = -1
Query: 163 EPVHAEDREDVGGYGGRDGDERLHEDVRVYVRV 65
E +H G Y G DG + +D R+
Sbjct: 158 ESIHGGSSWGAGSYAGADGSRNVSDDELEIARI 190
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 23.0 bits (47), Expect = 5.4
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 79 LGRLHGVAHHRRGR 120
LGR++GV RRGR
Sbjct: 878 LGRVYGVVSKRRGR 891
>SPBC3H7.13 |||FHA domain protein Far10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 22.6 bits (46), Expect = 7.2
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -1
Query: 106 DERLHEDVRVYVRVALRGGGVRAEP 32
DE +H+ V VR+ +RG P
Sbjct: 113 DEIVHQKVSAQVRIVVRGATFATTP 137
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 22.6 bits (46), Expect = 7.2
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1
Query: 181 KEELPPEPVHAEDREDVGG 125
K ELPP+ + E +E GG
Sbjct: 539 KNELPPKVIILEAKERTGG 557
>SPAC1296.02 |cox4||cytochrome c oxidase subunit
IV|Schizosaccharomyces pombe|chr 1|||Manual
Length = 164
Score = 22.2 bits (45), Expect = 9.5
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 163 EPVHAEDREDVGGYGGRDGD 104
E +A++ D+ G GGRDG+
Sbjct: 45 ELANAKEPSDLIGPGGRDGE 64
>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 591
Score = 22.2 bits (45), Expect = 9.5
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +2
Query: 2 DXCEVTAYVTRLGTHSAAAQCDSHIHSDVFMESLITVAAAIPSNIFAVLGMDR---LGRK 172
D EV + + A A+ H+D+ M+ + +A + + V G+DR +GR+
Sbjct: 266 DFMEVETPMMNMIAGGATAKPFVTHHNDLDMDLYMRIAPELYLKMLVVGGLDRVYEIGRQ 325
Query: 173 F 175
F
Sbjct: 326 F 326
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 709,310
Number of Sequences: 5004
Number of extensions: 10967
Number of successful extensions: 53
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 54
effective length of database: 2,092,262
effective search space used: 41845240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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