Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt18b24
(226 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein. 25 0.15
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 23 0.35
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 23 0.35
AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellif... 22 0.80
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 22 1.1
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 21 2.5
AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 21 2.5
AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein. 21 2.5
AF498306-5|AAM19330.1| 456|Apis mellifera dopamine receptor typ... 20 3.2
L01589-1|AAA27736.1| 81|Apis mellifera zinc finger protein pro... 20 4.3
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 20 4.3
DQ666693-1|ABG29167.1| 250|Apis mellifera MAX dimerization prot... 19 7.5
>AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein.
Length = 554
Score = 24.6 bits (51), Expect = 0.15
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +1
Query: 103 HHRRGRHTLQHLRGPRH 153
HH+ G HT+ GP H
Sbjct: 335 HHQHGNHTMGPTMGPPH 351
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 23.4 bits (48), Expect = 0.35
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Frame = -1
Query: 208 RASRECCKHKEELPPEPVHAEDRE-DVGGYGG 116
R C H LPP P+H E + V G G
Sbjct: 429 RFGGSCLIHGPPLPPLPLHTECEDLSVSGEAG 460
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 23.4 bits (48), Expect = 0.35
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Frame = -1
Query: 208 RASRECCKHKEELPPEPVHAEDRE-DVGGYGG 116
R C H LPP P+H E + V G G
Sbjct: 429 RFGGSCLIHGPPLPPLPLHTECEDLSVSGEAG 460
>AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellifera
ORF for hypotheticalprotein. ).
Length = 998
Score = 22.2 bits (45), Expect = 0.80
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -1
Query: 175 ELPPEPVHAEDRED 134
E EP H EDRE+
Sbjct: 421 EFEVEPAHGEDREE 434
Score = 19.8 bits (39), Expect = 4.3
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = +1
Query: 145 PRHGQAREEVL 177
P HG+ REE L
Sbjct: 426 PAHGEDREEAL 436
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 21.8 bits (44), Expect = 1.1
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -2
Query: 48 ECVPSRVTYAVTSXMS 1
E +P+RVT VTS ++
Sbjct: 240 EAIPARVTLGVTSLLT 255
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 20.6 bits (41), Expect = 2.5
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -2
Query: 48 ECVPSRVTYAVTSXMS 1
E P+RVT VTS ++
Sbjct: 271 EAAPARVTLGVTSLLT 286
>AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice
variant B protein.
Length = 810
Score = 20.6 bits (41), Expect = 2.5
Identities = 9/44 (20%), Positives = 21/44 (47%)
Frame = -1
Query: 163 EPVHAEDREDVGGYGGRDGDERLHEDVRVYVRVALRGGGVRAEP 32
+PVH + + +++ + V+VY+++ G +EP
Sbjct: 274 QPVHVHKQTAIAFRTPTYRMQQVEQPVQVYIQLKRPSDGATSEP 317
>AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein.
Length = 602
Score = 20.6 bits (41), Expect = 2.5
Identities = 9/44 (20%), Positives = 21/44 (47%)
Frame = -1
Query: 163 EPVHAEDREDVGGYGGRDGDERLHEDVRVYVRVALRGGGVRAEP 32
+PVH + + +++ + V+VY+++ G +EP
Sbjct: 274 QPVHVHKQTAIAFRTPTYRMQQVEQPVQVYIQLKRPSDGATSEP 317
>AF498306-5|AAM19330.1| 456|Apis mellifera dopamine receptor type
D2 protein.
Length = 456
Score = 20.2 bits (40), Expect = 3.2
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = -1
Query: 58 RGGGVRAEPRHVRR 17
RGGG + RH+ R
Sbjct: 262 RGGGTNTDARHLFR 275
>L01589-1|AAA27736.1| 81|Apis mellifera zinc finger protein
protein.
Length = 81
Score = 19.8 bits (39), Expect = 4.3
Identities = 6/13 (46%), Positives = 8/13 (61%)
Frame = +1
Query: 163 REEVLPCVCNILG 201
R LPC C++ G
Sbjct: 37 RTHTLPCKCHLCG 49
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 19.8 bits (39), Expect = 4.3
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = +1
Query: 109 RRGRHTLQHLRGPRHGQAREEVLP 180
+RGR+T + GQA+ + P
Sbjct: 993 KRGRYTPPQPANAQQGQAQAQAKP 1016
>DQ666693-1|ABG29167.1| 250|Apis mellifera MAX dimerization protein
protein.
Length = 250
Score = 19.0 bits (37), Expect = 7.5
Identities = 9/30 (30%), Positives = 14/30 (46%)
Frame = -2
Query: 120 AAATVMSDSMKTSECMCESHCAAAECVPSR 31
AAA ++S SEC + + + SR
Sbjct: 162 AAAALLSKRRSVSECSLGTASSTSSTASSR 191
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,721
Number of Sequences: 438
Number of extensions: 779
Number of successful extensions: 13
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used: 3533460
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)
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