Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18b21
         (517 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    26   3.8  
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual     26   3.8  
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha...    25   5.1  
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    25   5.1  
SPCC18.06c |caf1|pop2|CCR4-Not complex subunit Caf1|Schizosaccha...    25   5.1  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   6.7  
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po...    25   8.9  
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo...    25   8.9  

>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = +3

Query: 411 YKRDAEMVHELGVDTYRFSVSW 476
           Y+R+++ +++L +DT+   V W
Sbjct: 654 YRRESQKIYKLSIDTFGEEVPW 675


>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
 Frame = +3

Query: 300 WNVDGKSESIWDHL----VHKNPEFVKDGSNADVASDSYHLYKRD-AEMVHELGVDTYRF 464
           WN+D   E++WD+L    V+  P  ++   +  V   + H    D    +H      ++ 
Sbjct: 275 WNIDELKETMWDYLNLVRVYTRPRGLEPDYSEPVILRTGHSTVEDFCNNIHSSIKSQFKH 334

Query: 465 SVSWPRILP 491
           +  W + +P
Sbjct: 335 AYVWGKSVP 343


>SPBC36.09 |sap61||U2 snRNP-associated protein
           sap61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 220 EEKIRTTSFQKISYLEYLQLL 282
           EE I  ++ Q ISYLEYL+ L
Sbjct: 144 EEYINLSNVQHISYLEYLKNL 164


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 402 YHLYKRDAEMVHELGVDTYRFSVSWPRILPTG 497
           Y+LY  + + V+ LG D   +++S     PTG
Sbjct: 149 YYLYNTETKDVNMLGQDNEHWTISLAEWSPTG 180


>SPCC18.06c |caf1|pop2|CCR4-Not complex subunit
           Caf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 19/92 (20%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
 Frame = +3

Query: 228 NTNYKFPENFIFGVSTAAAQIEGAWNVDGKSE-SIWDHLVHKNPEFVKDGSNADVASDSY 404
           N+N+ +P   + G+S+  + I   W+ + + E ++   L+ + P    D     V +   
Sbjct: 2   NSNFSYPALGVDGISSQISPIRDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPL 61

Query: 405 HLYKRDAEMVHELGVDTYRFSVSWPRILPTGL 500
            ++K   +  ++    T R +V   +I+  GL
Sbjct: 62  GVFKSSDDYHYQ----TLRANVDSLKIIQIGL 89


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -3

Query: 386  VRVGSIFDELGVFVHQMIPNTFGFTVYIPSALYLGSSCRYSKYEIFWKLV 237
            V+ G +F+ L   +  +  +  G+ V   S  Y  S    S+Y IFW LV
Sbjct: 1364 VQFGHVFNLLHSIISYVRKHQGGYGVVAVSDKY--SKQTLSRYPIFWSLV 1411


>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -3

Query: 365 DELGVFVHQMIPNTFG-FTVYIPSALY 288
           +++ VF++ M+P+TF  F +  P  LY
Sbjct: 52  EKIDVFINAMVPSTFALFCMACPYLLY 78


>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 651

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 341 GAQKPRVRQRWIQRGRCIRFLSFI 412
           GA    VRQ  I  GRCI+ L F+
Sbjct: 452 GADDKTVRQWDIVTGRCIQTLDFV 475


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,226,576
Number of Sequences: 5004
Number of extensions: 47454
Number of successful extensions: 123
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)