Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt18b20
(607 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 28 0.92
SPAC18G6.06 |||U3 snoRNP-associated protein Utp11|Schizosaccharo... 28 1.2
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce... 28 1.2
SPAC10F6.07c |mug94||sequence orphan|Schizosaccharomyces pombe|c... 27 1.6
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 27 1.6
SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces pomb... 27 2.8
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual 26 3.7
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 26 3.7
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ... 26 4.9
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 26 4.9
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 25 8.6
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch... 25 8.6
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 25 8.6
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 28.3 bits (60), Expect = 0.92
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +2
Query: 386 KEYLKDKSYYNSMLGAKNPNKAIDAAEKLKNSLIDRYAMELKQKRLNDIKE--NEIFKQK 559
K L + + A KA+DA K K R +ME +KRLN + E N + Q
Sbjct: 696 KSVLPESELEVRLKAADELKKALDAELKSKKVDPGRSSMEQLEKRLNKLNERINVMRTQM 755
Query: 560 IEENRKK 580
I+++ K
Sbjct: 756 IDKDENK 762
>SPAC18G6.06 |||U3 snoRNP-associated protein
Utp11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +3
Query: 99 NHIESVSHTVQAHKN-GE*RKHAV 167
+H+E HTV AH+N E RKH +
Sbjct: 115 DHLEQQMHTVGAHRNKNESRKHTI 138
>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 238
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Frame = +2
Query: 476 NSLIDRYAMELKQKRLNDIKENEIFKQ--KIEENRKKA 583
NS+ DR+ E ++K LN+ +NE +Q +I E +KKA
Sbjct: 24 NSIFDRFLQEERKKLLNN--KNEYLRQLSEINEAQKKA 59
>SPAC10F6.07c |mug94||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 188
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = -1
Query: 382 FAQIGYDSQIFHVIYVGVLLVTIFPSFFGAFKQFLC 275
F +IG ++ +F + + +L+++ FPSF + LC
Sbjct: 3 FNKIGDENVVFQIFKLEMLIMSEFPSFIEEKDKLLC 38
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 491 RYAMELKQKRLNDIKENEIFKQKIEENRKKAIEV 592
R A ++ K L+D+ + I +KIE+N IEV
Sbjct: 343 RLAKKVSSKSLSDVSDINISDEKIEKNGDVGIEV 376
>SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 415
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 374 LSKDKEYLKDKSYYNSMLGAKNPNKAID 457
L KD Y+K KS+ G + P KA+D
Sbjct: 19 LQKDHIYVKKKSHIKLNTGVRAPFKAVD 46
>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1097
Score = 26.2 bits (55), Expect = 3.7
Identities = 18/63 (28%), Positives = 34/63 (53%)
Frame = +2
Query: 416 NSMLGAKNPNKAIDAAEKLKNSLIDRYAMELKQKRLNDIKENEIFKQKIEENRKKAIEVS 595
+S G+K P D+ +S+ D +++ K+K+LN+ KEN + + + A E+
Sbjct: 12 SSQDGSKTPETEYDSHV---DSIEDIHSLASKRKKLNEKKEN---LEDLTLLKTSAFELK 65
Query: 596 INE 604
+NE
Sbjct: 66 LNE 68
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 503 ELKQKRLNDIKENEIFKQKIEENRKKAI 586
ELKQ N + EN + KQKI E + +
Sbjct: 483 ELKQLINNAVDENALMKQKINEEEETEV 510
>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 315
Score = 25.8 bits (54), Expect = 4.9
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = +2
Query: 401 DKSYYNSMLGAKNPNKAIDAAEKL--KNSLIDRYAMELKQKRLNDIKENE 544
D + N++ +P + I E+ K D+Y EL+QK D ENE
Sbjct: 265 DAVWVNAVRQGGDPLQGISPQERWIDKKEEYDKYEWELEQKSTMDEDENE 314
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 25.8 bits (54), Expect = 4.9
Identities = 20/84 (23%), Positives = 36/84 (42%)
Frame = +2
Query: 326 EYSYVYYMKYLRVIAYLSKDKEYLKDKSYYNSMLGAKNPNKAIDAAEKLKNSLIDRYAME 505
E Y+ ++K+L + + + L D+ ++N +L + + E LK +L Y
Sbjct: 315 EEVYLLFIKFLESPDFRASKAKSLVDRRFFNRLLALFDTEDPRE-RELLKTTLHRIYGKF 373
Query: 506 LKQKRLNDIKENEIFKQKIEENRK 577
L + N +F Q I E K
Sbjct: 374 LNLRSYIRKSMNNVFLQFIYEREK 397
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 25.0 bits (52), Expect = 8.6
Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Frame = +2
Query: 209 LHNVPDLKTKRANLSLFRLCK--TAQKLFESAEEARKNGDEEYSYVYYMKYLRVIAYLSK 382
L + D+ + LS+ +L T +++ + E +++ E + ++Y R A +S
Sbjct: 136 LKSEEDIPSSVTRLSVVKLVNRVTYERMRHTMLEFKRSIPEYRNSLFYTLIGRKKADVSI 195
Query: 383 DKEYLKDKSYYNSMLGAKNPNKAIDAAEKLKN-SLI 487
D++ + D Y+N L A + KA+ + +K SLI
Sbjct: 196 DQKLIGDIKYFNKELNA-SQKKAVKFSIAVKELSLI 230
>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 333
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2
Query: 281 KLFESAEEARKNGDEEYSYVYYM 349
KLF+ A E K GD + Y Y+
Sbjct: 62 KLFQDASELEKEGDGSWGYQDYV 84
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 25.0 bits (52), Expect = 8.6
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -3
Query: 317 HFSELLRR-FQTISVLSCIT*TKTG*PVSFSNLE 219
H S L +R F ++ VL+C T T G P+S +++
Sbjct: 342 HESRLSKRVFYSVYVLACYTSTIVGLPLSIEDVD 375
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,281,633
Number of Sequences: 5004
Number of extensions: 45675
Number of successful extensions: 163
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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