Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18b20
         (607 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    24   1.3  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   1.8  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   1.8  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   2.3  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   4.1  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   7.1  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    21   7.1  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   7.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.1  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   7.1  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 434 KNPNKAIDAAEKLKNSLIDRYAMELKQKRLNDIKEN 541
           K   K++D  + L+N  ID Y   LK  + +  + N
Sbjct: 124 KRRKKSLDDVKILRNDRIDSYKSNLKCDKCSTYQSN 159


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 521 LNDIKENEIFKQKIEENRKKAIEVSINE 604
           +ND++ +EIF +KIE +       + NE
Sbjct: 568 MNDLEPSEIFYEKIETSLNSDKPFTYNE 595


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 521 LNDIKENEIFKQKIEENRKKAIEVSINE 604
           +ND++ +EIF +KIE +       + NE
Sbjct: 568 MNDLEPSEIFYEKIETSLNSDKPFTYNE 595


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 293 SAEEARKNGDEEYSYVYYMKYLRVIAYLSKDKEYL 397
           S++  R+  D EY   Y+M+ + + AY    +E L
Sbjct: 207 SSKNMREYNDPEYKLDYFMEDVELNAYYYYMREML 241


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 293 SAEEARKNGDEEYSYVYYMKYLRVIAYLSKDKEYL 397
           S++  R+  D EY   Y+M+ + + AY    +E L
Sbjct: 207 SSKYMREYNDPEYKLDYFMEDVELNAYYYYMREML 241


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = -3

Query: 419 CCSMTYPSDTPYLCSDRL*LSNISCNIRRSTPRHHFS 309
           CC M +P D   L +     SN   N  ++   +H++
Sbjct: 88  CCGMRWPGDATGLSNRSSTSSNDPKNQYKNQNNNHYT 124


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 300 SALSNNFCAVLHNLNKD 250
           S+LSNN+ + + N N D
Sbjct: 83  SSLSNNYISNISNYNND 99


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +2

Query: 548 FKQKIEENRKKAIEVS-INEP 607
           +K  +EE R K +E+S + EP
Sbjct: 179 YKPDVEEQRYKQVEISQMTEP 199


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +2

Query: 392 YLKDKSYYNSMLGAKNPNKAIDAAEKLKNSLI 487
           YLKD     S +   +P      A+++KN ++
Sbjct: 188 YLKDAWIGRSFIDYVHPKDKATLADQIKNGIV 219


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +2

Query: 392 YLKDKSYYNSMLGAKNPNKAIDAAEKLKNSLI 487
           YLKD     S +   +P      A+++KN ++
Sbjct: 183 YLKDAWIGRSFIDYVHPKDKATLADQIKNGIV 214


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,146
Number of Sequences: 438
Number of extensions: 2950
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)