Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18b17
         (301 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0628 - 8266494-8266501,8266578-8266875,8268055-8268313,826...    31   0.22 
08_01_0233 + 1876940-1877509,1907940-1908195,1908290-1908589,190...    29   0.89 
03_03_0044 - 14021874-14022050,14022235-14022390,14023024-140232...    26   4.7  
03_06_0617 - 35124114-35124148,35124243-35124335,35124415-351249...    26   6.3  
06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411...    25   8.3  

>04_01_0628 -
           8266494-8266501,8266578-8266875,8268055-8268313,
           8268892-8269052,8269553-8269884,8270947-8271265,
           8271335-8271420,8271600-8271684
          Length = 515

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 77  ESQLKGLAKYFNSQTNRGRLNTARA-TYAVMGAVILYF 187
           +  L+G   Y++ Q N  RLN   A T AV+GA IL +
Sbjct: 101 DRSLRGTVVYYDGQMNDSRLNVGLACTAAVVGAAILNY 138


>08_01_0233 +
           1876940-1877509,1907940-1908195,1908290-1908589,
           1908777-1908939,1908958-1908994,1910122-1910742
          Length = 648

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +2

Query: 41  FQIRMAGDSSVDESQLKGLAKYFNSQTNRGRLNT 142
           F ++M GD  VD+   KGL  Y N     GRL T
Sbjct: 465 FNLKMKGDDGVDKDFSKGLLPY-NVVCRTGRLET 497


>03_03_0044 -
           14021874-14022050,14022235-14022390,14023024-14023203,
           14023816-14024074,14024178-14024416,14025180-14025260,
           14025320-14025328
          Length = 366

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 48  SGWPETLLSMNPSSKA*QNTSTVRQTEED 134
           SGW ETLL+ +P+  +     ++R+  ED
Sbjct: 131 SGWFETLLNSHPNVSSNGEIFSIRERRED 159


>03_06_0617 -
           35124114-35124148,35124243-35124335,35124415-35124919,
           35125039-35125238,35125514-35125604,35125699-35126769
          Length = 664

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = +2

Query: 50  RMAGDSSVDESQLKGLAKYFNSQTNRGRLNTAR 148
           R +GDS+++ESQ + L K  +  ++ G+  T++
Sbjct: 569 RTSGDSTIEESQKQKLQKNKSKASSGGQKKTSK 601


>06_03_0867 + 25534760-25539620,25540662-25540857,25540957-25541104,
            25541673-25541751,25542151-25542238,25542330-25542600,
            25542676-25542718,25542801-25542904,25543374-25543790
          Length = 2068

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = -1

Query: 292  CSHDFNYVLYNLTIPYRNMLINF---ACNSFLGFRFQCEVKDDC 170
            CS+    +  N+  PYR++ +N     C  FL  +  C   D+C
Sbjct: 1890 CSYFLRGLCTNIACPYRHVKVNLNAPVCEDFL--KGYCAYGDEC 1931


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,953,769
Number of Sequences: 37544
Number of extensions: 105955
Number of successful extensions: 233
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)