Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt18b14
(319 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC550.01c |||CHCH domain protein |Schizosaccharomyces pombe|ch... 46 1e-06
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 26 1.6
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy... 25 2.8
SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos... 25 2.8
SPBC1773.04 |||flavonol reductase/cinnamoyl-CoA reductase family... 25 3.7
SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatas... 25 3.7
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom... 24 4.8
SPBC428.06c |||histone deacetylase complex subunit, RXT2 family ... 24 4.8
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 24 6.4
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|... 24 6.4
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 23 8.5
>SPCC550.01c |||CHCH domain protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 77
Score = 46.4 bits (105), Expect = 1e-06
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +1
Query: 118 DDDPVEGMLKKTGCLELHYKVQECIAETKDWRKCQTAVNNFRDCINK 258
+ D + L+K GC+E H ++ +C +T DWRKC + FR C K
Sbjct: 14 EKDVWDTALEKGGCVEEHLRLNDCYWDTHDWRKCTEQMEEFRKCWEK 60
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 25.8 bits (54), Expect = 1.6
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +1
Query: 205 DWRKCQTAVNNFRDCINKHKQEEINKN 285
DW K +F D IN+ KQ NKN
Sbjct: 318 DWEKAYA--EDFADLINRAKQSTTNKN 342
>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 384
Score = 25.0 bits (52), Expect = 2.8
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +2
Query: 104 NRSAVMMIPWKAC*KKLAVWNYTIK 178
N A+ I WK K + WNY K
Sbjct: 169 NSDAIKSIAWKEKDKSIKTWNYQPK 193
>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 584
Score = 25.0 bits (52), Expect = 2.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 167 SSRQPVFFSMPSTGSSSLPICSRGFIVIFSYEI 69
S+ QP+ F++P+T S P I FS I
Sbjct: 219 SAAQPIIFNLPATVEMSTPNTYADLIEYFSTNI 251
>SPBC1773.04 |||flavonol reductase/cinnamoyl-CoA reductase
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 336
Score = 24.6 bits (51), Expect = 3.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 214 FSSLSFRRCIPALYSVVPDSQFFSACLPRD 125
FS+ F + I Y V P+S+FF+ RD
Sbjct: 214 FSTWFFWQLIKGRYEVAPESKFFNYVDVRD 243
>SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatase
Ppe1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 305
Score = 24.6 bits (51), Expect = 3.7
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = +2
Query: 152 LAVW---NYTIKCRNASPKRKTGESVKPQLIISEIVS 253
+ VW NY +C N + K ES++P+ I V+
Sbjct: 252 VTVWSAPNYCYRCGNVASVMKVDESLEPEFRIFSAVA 288
>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 329
Score = 24.2 bits (50), Expect = 4.8
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = +1
Query: 193 AETKDWRKCQTAVNNFRDCINKHKQEEI 276
AET +W C +RD + K E I
Sbjct: 165 AETFEWLVCSECSEKYRDHLLNQKHESI 192
>SPBC428.06c |||histone deacetylase complex subunit, RXT2 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 242
Score = 24.2 bits (50), Expect = 4.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 157 CLELHYKVQECIAETKDWRKCQTAV 231
C EL VQE + ++K++ +C T V
Sbjct: 177 CRELTITVQEALEKSKEFIRCWTNV 201
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 23.8 bits (49), Expect = 6.4
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +1
Query: 88 TIKPREQIGSDDDPVEGMLKKTGCLELHYKVQECIAETKDWRKCQTAVNNFRD 246
T+K Q S +D E ++ C E+ V++ KD K T+ NN +
Sbjct: 245 TLKSSGQYVSKEDITELFAEQVKCSEIAQVVRDEQDTAKDPVKALTSTNNVEE 297
>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1369
Score = 23.8 bits (49), Expect = 6.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 161 WNYTIKCRNASPKRKTGESVKP 226
WNY I+C+ P RKT + P
Sbjct: 750 WNYLIQCK--KPARKTPLLIPP 769
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 23.4 bits (48), Expect = 8.5
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +1
Query: 64 KRISYENMTIKPREQIGSDDDPVEGMLKKTGCLELHYKVQEC 189
K +++EN++ R+Q+ S V G ++ G EL + C
Sbjct: 1018 KLLTHENISASHRQQLQSAVRNVLGTMEDRGSSELKKLAEVC 1059
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,214,736
Number of Sequences: 5004
Number of extensions: 22901
Number of successful extensions: 68
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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