Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18b11
         (467 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031627-22|CAI79188.1|  213|Caenorhabditis elegans Hypothetical...    30   0.72 
Z92784-3|CAB07194.1|  318|Caenorhabditis elegans Hypothetical pr...    27   6.7  
AC024806-1|AAF59524.1|  149|Caenorhabditis elegans Hypothetical ...    27   8.9  

>AL031627-22|CAI79188.1|  213|Caenorhabditis elegans Hypothetical
           protein Y102A5C.36 protein.
          Length = 213

 Score = 30.3 bits (65), Expect = 0.72
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 363 YNFIYTNSNCFHRLCLTLRSNIFLGGNRNY 452
           YNF+Y + NC   + ++L  N+FL   R Y
Sbjct: 52  YNFLYFSPNCVETIFVSLGRNLFLCLQRRY 81


>Z92784-3|CAB07194.1|  318|Caenorhabditis elegans Hypothetical
           protein F31C3.4 protein.
          Length = 318

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 253 FELFNHSLHFGKYNLLYKKLFQYLLCNILLKII 155
           FE+  H LH GKY +L K  F Y+   I++  I
Sbjct: 280 FEVIPHELHNGKYRIL-KMFFIYMGFAIVVAFI 311


>AC024806-1|AAF59524.1|  149|Caenorhabditis elegans Hypothetical
          protein Y52E8A.3 protein.
          Length = 149

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +1

Query: 10 FFKSIRKTHPIFKII 54
          FF+ I+KTHP F+II
Sbjct: 51 FFEEIKKTHPEFEII 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,912,143
Number of Sequences: 27780
Number of extensions: 157800
Number of successful extensions: 352
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)