Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18b09
         (320 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c...    26   1.2  
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos...    25   3.8  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    23   8.7  

>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 355

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +1

Query: 70  VQGRELFRHGIRLRKSRDDIQVRADIERQGNAHRAR*ASLFTRDIRNAPAVRYG 231
           V  R++   G+ +RKS  +  +R D +R   +   R  S  TR  ++ P  R+G
Sbjct: 237 VDQRQILTAGLNIRKSSANNSMRDDKKRNHKSSYKRSLSPSTRYHQDRPDKRHG 290


>SPAC15A10.13 |ppk3||serine/threonine protein kinase
           Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 637

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 177 PCTMSVTLTFDVSSHLYIIARLSQPNAVSKQLSALN 70
           PC +    T+  S+HLYI     +P  V+ +L+ L+
Sbjct: 78  PCIIKYLSTYKSSTHLYIATETVRP--VTTELNELS 111


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 8   PLNADRSARLLLSTLSPHDNV 70
           PL +  + RLLL  + PHD +
Sbjct: 464 PLESSSAFRLLLLNMHPHDEL 484


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,232,556
Number of Sequences: 5004
Number of extensions: 20583
Number of successful extensions: 41
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)