Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18b09
         (320 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0360 - 28729006-28729446,28729810-28730258,28730499-28731480     30   0.47 
01_06_0668 + 31058497-31059510,31059609-31059676,31060189-310602...    28   1.9  
01_01_1018 - 8046819-8046876,8046995-8047212,8048099-8048177,804...    27   3.3  
12_01_0049 + 417325-419068,419667-420307                               26   5.7  
11_01_0047 + 358370-360107,360713-361353                               26   5.7  
02_05_0791 + 31773175-31773308,31773403-31773561,31775867-317759...    26   7.6  

>01_06_0360 - 28729006-28729446,28729810-28730258,28730499-28731480
          Length = 623

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 165 SSCTVSQFIHERHSKRASCEVRGARDAVGSYTRE*HLPTV 284
           ++C V+   H R S    C+++G+   VG +  E   PT+
Sbjct: 441 NACAVTLLAHARESFSCKCKIKGSHTIVGLWKHEYWQPTM 480


>01_06_0668 +
           31058497-31059510,31059609-31059676,31060189-31060270,
           31060339-31060431,31060516-31060668,31060900-31060968,
           31061091-31061184,31061594-31061677,31062133-31062221,
           31062340-31062456,31062567-31062707,31062823-31063005
          Length = 728

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 28  RALVTQYAFTSRQRVQGRELFRHGIRLRKSRDD 126
           R ++T+ AFT R+ + GR  ++H I      DD
Sbjct: 645 RLMMTERAFTDREGLSGRPWYKHLIYAPSLHDD 677


>01_01_1018 - 8046819-8046876,8046995-8047212,8048099-8048177,
            8048455-8048540,8048698-8048983,8049063-8049205,
            8049308-8049508,8049626-8049754,8050463-8050738,
            8050823-8051098,8051364-8052364,8052452-8052634,
            8052865-8052937,8053205-8053313,8053622-8053785
          Length = 1093

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 113  FRNRMPCRNSSLP*TRCREVKAY*VTSARTDRRSEG 6
            F + + C N+     RCR++KAY    + TD    G
Sbjct: 1058 FTHSLLCDNADCSAPRCRDIKAYIADRSMTDLSISG 1093


>12_01_0049 + 417325-419068,419667-420307
          Length = 794

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +2

Query: 149 NVRVTLIVHGEPVYSRETFETRQL*GTGGARRRRFVHAGITFTHGYL 289
           N  ++  +H     +  ++ETR     G AR   F+H  +T  HG L
Sbjct: 573 NGSLSQFLHARAPNTPISWETRMTIAKGTARGLAFLHDDMTIVHGNL 619


>11_01_0047 + 358370-360107,360713-361353
          Length = 792

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +2

Query: 149 NVRVTLIVHGEPVYSRETFETRQL*GTGGARRRRFVHAGITFTHGYL 289
           N  ++  +H     +  ++ETR     G AR   F+H  +T  HG L
Sbjct: 571 NGSLSQFLHARAPNTPISWETRMTIAKGTARGLAFLHDDMTIVHGNL 617


>02_05_0791 +
           31773175-31773308,31773403-31773561,31775867-31775927,
           31776120-31776407
          Length = 213

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +2

Query: 104 GCESLAMIYK*ELTSNVRVTLIVHGEPVYSRETFETRQL*GTGGARRRRFVHAGITF 274
           GC S A+    + T N  V   + G P++ R  F  +QL  T   RRR +    I F
Sbjct: 95  GCSSKAIK---KATENQEVVEAI-GVPIFLRHPFSFKQLNSTSSYRRRLWKAQYIVF 147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,528,163
Number of Sequences: 37544
Number of extensions: 149626
Number of successful extensions: 407
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)