Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18b07
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr ...    25   7.1  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    25   9.4  

>SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +1

Query: 394 SILGLKDGWLRDRVVMVIDEKNN 462
           S   L DGW  D VV  I  KNN
Sbjct: 119 SYADLYDGWTMDNVVARIGTKNN 141


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 358 SCAPVMLEKAECSILGLKDGW 420
           SCA + L KA   ++GLKD W
Sbjct: 276 SCARLPLLKAFKDVIGLKDVW 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,279,900
Number of Sequences: 5004
Number of extensions: 40611
Number of successful extensions: 84
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)