Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18b07
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    25   0.48 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   4.4  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   5.9  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 261 LSPVLSRKQEDKNTRKLD*SRNAQS 335
           L+P L+RKQ  KNT  L+ SR+  S
Sbjct: 340 LTPKLARKQFQKNTTGLERSRSWSS 364


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 581 ATSAKLTCKGSICACFT 531
           ++SA  TC G    CFT
Sbjct: 285 SSSASTTCSGHTVRCFT 301


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 227 RQLVCLAVLTTLIACTV 277
           R L+C+  LTT+++ TV
Sbjct: 430 RALLCVFFLTTIVSTTV 446


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,202
Number of Sequences: 438
Number of extensions: 2702
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)