Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt18b06
(644 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|... 122 4e-29
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe... 108 8e-25
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha... 62 5e-11
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc... 59 5e-10
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo... 47 2e-06
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 32 0.081
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 26 4.0
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom... 26 4.0
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 26 5.3
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 26 5.3
SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12 |Schiz... 25 9.3
SPBC16G5.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 9.3
>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 503
Score = 122 bits (294), Expect = 4e-29
Identities = 61/143 (42%), Positives = 83/143 (58%)
Frame = +1
Query: 214 GLFINNEWVKSSDGKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMD 393
GLFINN+ V S G K +P+ ++I EV F+ +PWR
Sbjct: 24 GLFINNQHVDSVHGGRVKVYSPSTEKLICEVADADEEDVDIAVKVARAAFQTDAPWRKFS 83
Query: 394 ASERGALINKLADLIERDRTYLASLETLDNGKPYKDSYFGDLYASIKNLRYYAGWADKIH 573
+++RG +++LAD IE++ YLAS+ETLDNGK + GD+ A+ RYY GWADK +
Sbjct: 84 SAQRGRCLSRLADCIEQNLEYLASIETLDNGKSITLAR-GDVQAAADCFRYYGGWADKDY 142
Query: 574 GNVLPADGKYFAYXRHEPVGVCG 642
G + D K FAY RHEP+GVCG
Sbjct: 143 GQTIETDIKRFAYTRHEPIGVCG 165
>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 108 bits (259), Expect = 8e-25
Identities = 57/143 (39%), Positives = 84/143 (58%)
Frame = +1
Query: 214 GLFINNEWVKSSDGKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMD 393
GL+IN EW KS++ T++T +P+ +VIA+V FK W+ +
Sbjct: 22 GLYINGEWHKSAE--TWETVDPSIEEVIAKVYLAGEKEIDYAVKSAKEAFKT---WKKVP 76
Query: 394 ASERGALINKLADLIERDRTYLASLETLDNGKPYKDSYFGDLYASIKNLRYYAGWADKIH 573
SE+G L+ KLA+L E+ LA++E +D+GKP + GD+ +I LRY AGWADKI+
Sbjct: 77 GSEKGELLMKLAELTEKHADTLAAIEAMDSGKPLVSNARGDVDGTIALLRYCAGWADKIY 136
Query: 574 GNVLPADGKYFAYXRHEPVGVCG 642
G V+P + AY + P+GVCG
Sbjct: 137 GQVIPTGPEKLAYAKRTPIGVCG 159
>SPAC139.05 |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 493
Score = 62.5 bits (145), Expect = 5e-11
Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 2/141 (1%)
Frame = +1
Query: 220 FINNEWVKSSDGKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMDAS 399
F+ +W+ S + KTF+ +NPA G++I +V FK ++
Sbjct: 21 FVQGKWISSPNNKTFEVDNPATGEIIGKVADVSVEETKKAISAANEAFK---TYKNFTHV 77
Query: 400 ERGALINKLADLIERDRTYLASLETLDNGKPYKDSYFGDLYASIKNLRYYAGWADKIHGN 579
+R L+ + A+LI ++ L + TL+NGKP + ++ L++YA A + G+
Sbjct: 78 QRSQLLERWAELIMENKDDLVKMLTLENGKPLSQAEM-EVTTCSGYLKWYAAEAVRTFGD 136
Query: 580 VLPA--DGKYFAYXRHEPVGV 636
V P+ + F +PVGV
Sbjct: 137 VAPSSLQSQNFLISIKQPVGV 157
>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 59.3 bits (137), Expect = 5e-10
Identities = 41/142 (28%), Positives = 69/142 (48%), Gaps = 1/142 (0%)
Frame = +1
Query: 220 FINNEWVKSSDGKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMDAS 399
+I +WV ++ GKTF ENP + +A V F +R D
Sbjct: 27 YIGGKWVTAASGKTFDVENPGLNETLAPVTDMSVEETRKAIKVAHEAFL---SYRNSDIK 83
Query: 400 ERGALINKLADLIERDRTYLASLETLDNGKPYKDSYFGDLYASIKNLRYYAGWADKIHG- 576
ER A++ + DLI + LA++ TL+NGK D+ G++ + K + ++AG A +I G
Sbjct: 84 ERYAILRRWYDLIMENADDLATMMTLENGKALGDAK-GEVVYAAKFIDWFAGEALRISGD 142
Query: 577 NVLPADGKYFAYXRHEPVGVCG 642
+ + ++ + +PVGV G
Sbjct: 143 SSMSSNPQNRIITIKQPVGVVG 164
>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 500
Score = 47.2 bits (107), Expect = 2e-06
Identities = 37/147 (25%), Positives = 64/147 (43%), Gaps = 5/147 (3%)
Frame = +1
Query: 217 LFINNEWVKSSD--GKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTM 390
LFI+ ++V + K NPA ++I + F+ G W
Sbjct: 23 LFIDGKFVSPIEPAAKPIPLINPATEEIIGTCANASAKDVDSAVENAYNTFRSGI-WAKW 81
Query: 391 DASERGALINKLADLIERDRTYLASLETLDNGKPYKDSYFGDLYASIKNLRYYAGWADKI 570
+RG ++ K+A ++ R LA ++T++ GKP + F D+ + YYA A+
Sbjct: 82 PGKQRGLVLRKIAKMMREKRELLAGIDTINCGKPTPYALF-DIDSCADMFEYYAEVAETD 140
Query: 571 HGNV---LPADGKYFAYXRHEPVGVCG 642
+ V LP + + A+ + P GV G
Sbjct: 141 NPTVKVPLPNNPGFCAFEKRFPRGVIG 167
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 31.9 bits (69), Expect = 0.081
Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Frame = +1
Query: 379 WRTMDASERGALINKLADLIERDRTYLASLETLDNGKPYKDSYFGDLYASIKNLRY-YAG 555
W++ +ER + L + I R++ A + D GK D+ FG++ +++ + + A
Sbjct: 41 WKSTSFAERRNFLKALKENIIRNQDKYAEIACKDTGKTLVDAAFGEILVTLEKINWTLAN 100
Query: 556 WADKIHGNVLP---ADGKYFAYXRHEPVGV 636
+ P Y ++EP+GV
Sbjct: 101 GEQSLRPTKRPNSLLTSYKGGYVKYEPLGV 130
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 26.2 bits (55), Expect = 4.0
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +3
Query: 111 VAERLQIGSGAKSEFCNSCFSGTGSPNKT-GNFIHWSLHKQ*VGEV 245
+A + + + CN+ G NK GN IH+ L K G+V
Sbjct: 1054 LAHEINAADSSSEQICNALRRGFLRLNKKLGNVIHYDLRKSSEGDV 1099
>SPBC725.14 |arg6||acetylglutamate synthase Arg6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 500
Score = 26.2 bits (55), Expect = 4.0
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -2
Query: 556 TRRSTVGFLLKHTDHRNTSP 497
+RRST GFL KH+ ++ SP
Sbjct: 19 SRRSTKGFLQKHSSLKDGSP 38
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 25.8 bits (54), Expect = 5.3
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +2
Query: 29 IHLNKLVPVTVRDYFVCVLWNI*IY 103
+H N +P+ D FV +LW+ +Y
Sbjct: 969 LHSNITIPILQSDSFVGILWHTIVY 993
>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 690
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = -2
Query: 184 EPVPLKQLLQNSLFAPEPICRRSATFLIYLYVPKYTDKIISYSYRHKFV 38
+P + L+ ++ + +C R AT +Y Y P + +S+SYR +
Sbjct: 326 KPSTTSKNLKFTIMSYNVLCERYATSTLYGYTPSWA---LSWSYRKDLI 371
>SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 375
Score = 25.0 bits (52), Expect = 9.3
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +2
Query: 317 TKQMWTKL*RQLEMRSNLDHHGEQWTPPRGGPLST 421
T M TKL Q +M+ +D H WTP ST
Sbjct: 24 TSAMDTKL--QTKMKEIIDQHTSTWTPVVSSVTST 56
>SPBC16G5.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 126
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -2
Query: 550 RSTVGFLLKHTDHRNTSPCMVCRCPAS 470
R F K ++ NT+ +VC CP S
Sbjct: 41 RKYENFFAKENENLNTAARLVCDCPIS 67
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,605,206
Number of Sequences: 5004
Number of extensions: 51685
Number of successful extensions: 134
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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