Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18b04
         (384 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2...    27   0.76 
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    25   4.1  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    25   4.1  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    25   5.4  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    25   5.4  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    24   7.1  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    24   9.4  
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   9.4  
SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor Whi5...    24   9.4  

>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 27.5 bits (58), Expect = 0.76
 Identities = 15/65 (23%), Positives = 26/65 (40%)
 Frame = +2

Query: 131 RYHGESHFKPPTMDELPVPKGSWQSHHDANQRRFNAVLLFGIXXXXXXXXXXKTSGLVYL 310
           R+  +S F+  T D      GS     +   +  N++    +          K SG++YL
Sbjct: 67  RFRRDSTFESETSDHEDFSGGSENELDEETTKNANSIKKISLEEVEKQRKAIKRSGVIYL 126

Query: 311 NYSPP 325
           +  PP
Sbjct: 127 SRIPP 131


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +2

Query: 104 SRFFQQTVRRYHG--ESHFKPPTMDELPVPKG 193
           +R FQ  + RY    E   KP  ++E+P P G
Sbjct: 267 NRQFQSDIDRYRKDPEGFMKPAELNEIPKPAG 298


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
 Frame = -1

Query: 228 RRWLASWCD--CHEPLGTGNSSMVGG 157
           RRWL       CH  +G GN S  GG
Sbjct: 568 RRWLVRLRQACCHPQVGFGNKSAFGG 593


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 173 HPWWGA*SDFRHGSDALF 120
           +P+W   SDF H S+AL+
Sbjct: 658 YPYWHRNSDFSHISEALY 675


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 168 WMNYQCPKAHGSRT 209
           WM   CPK HG  T
Sbjct: 484 WMKTTCPKCHGPAT 497


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 113 FQQTVRRYHGESHFKPPTMDELPVPKGSWQSHHDANQRRFNAV 241
           F+  +R Y+G   +K  T+D+L V   + Q HH  +  ++  V
Sbjct: 829 FEDYLRFYYGNKAYKIYTIDKL-VWSAAKQVHHIVSDGKYKFV 870


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 100 NLACYEHFYCSALC 59
           +LACYE F   ALC
Sbjct: 666 SLACYEFFLALALC 679


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = -3

Query: 157 LEVTFAMVATHCLLEEPRCNLACYEHFYCSALCVVSFIHFVSRSTH 20
           LE+ F+   T   +    C   C++H  CS+      + + S+ TH
Sbjct: 6   LEIGFSKALTE--VAPVTCQCECWDHNLCSSQASEMDLIYQSQDTH 49


>SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor
           Whi5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 252

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 111 SSNKQCVATMAKVTSSPPPWMNYQCP 188
           SS+    +T +    + PPW+NY  P
Sbjct: 140 SSSSAVSSTSSSFDRTSPPWLNYVEP 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,549,983
Number of Sequences: 5004
Number of extensions: 27077
Number of successful extensions: 81
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)