Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt18b02
(645 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 242 3e-65
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 66 3e-12
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 45 1e-05
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 40 4e-04
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 31 0.19
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce... 29 0.43
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 29 0.76
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 27 2.3
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 26 4.0
SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch... 26 5.3
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 26 5.3
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF... 26 5.3
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 26 5.3
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 25 9.3
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom... 25 9.3
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 242 bits (592), Expect = 3e-65
Identities = 110/156 (70%), Positives = 141/156 (90%), Gaps = 1/156 (0%)
Frame = +2
Query: 179 YEPPIPTRVGKKKRKAK-GPDAALKLPQVTPHTRCRLKLLKLERIKDYLLMEEEFIRNQE 355
YEPP+PTR G++K+KA+ GPDA+ KLP V P TRCRL+LLK++RI D+LLMEEE+++NQE
Sbjct: 31 YEPPVPTRTGRRKKKAQSGPDASAKLPTVIPTTRCRLRLLKMQRIHDHLLMEEEYVQNQE 90
Query: 356 RLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQ 535
RLKPQ+E+ +EER++VD++RGTPMSVG LEEIIDD+HAIVST+ G E+YVSI+SFVDKD
Sbjct: 91 RLKPQDERTQEERNRVDEIRGTPMSVGTLEEIIDDDHAIVSTA-GPEYYVSIMSFVDKDM 149
Query: 536 LEPGCSVLLNHKVHAVVGVLGDDTDPMVSVMKLEKA 643
LEPGCSVLL+HK ++VG+L DDTDPM++VMKL+KA
Sbjct: 150 LEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKA 185
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 66.5 bits (155), Expect = 3e-12
Identities = 36/111 (32%), Positives = 64/111 (57%)
Frame = +2
Query: 299 LERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVS 478
LER + L ++E FI+ E K + ++ + +V ++ P+ +G E ID N AIV
Sbjct: 16 LERQLEMLDLQEGFIK--EDCKSLKRELIRAQEEVKRIQSVPLVIGQFLEAIDQNTAIVG 73
Query: 479 TSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMVSVMK 631
++ GS + V ILS +D++ L+P SV L +A+V +L + D +S+++
Sbjct: 74 STTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLR 124
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 44.8 bits (101), Expect = 1e-05
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 4/117 (3%)
Frame = +2
Query: 299 LERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDD----LRGTPMSVGNLEEIIDDNH 466
LE+ K YLL E+ + L+ + ++ K +D L+ +G + + +D
Sbjct: 8 LEKYKSYLLQHREWDSKLKDLRFGNRDLVKKYDKTEDDIKSLQSVGQIIGEVLKQLDSER 67
Query: 467 AIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMVSVMKLE 637
IV S G + V + VD+ L G V L+ ++ +L + DP+V M +E
Sbjct: 68 FIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLVYNMSIE 124
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 39.5 bits (88), Expect = 4e-04
Identities = 29/130 (22%), Positives = 57/130 (43%), Gaps = 21/130 (16%)
Frame = +2
Query: 314 DYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIID------------ 457
D +M+ EF R EKI+E + K+ + + P VGN+ EI+D
Sbjct: 49 DIKVMKSEFQRLTHEKSTMLEKIKENQEKISNNKMLPYLVGNVVEILDMQPDEVDVQESA 108
Query: 458 ---------DNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTD 610
A++ TS ++ ++ V+ ++L PG + +N + ++ L + D
Sbjct: 109 NQNSEATRVGKSAVIKTSTRQTIFLPLIGLVEPEELHPGDLIGVNKDSYLIIDKLPSEYD 168
Query: 611 PMVSVMKLEK 640
V M++++
Sbjct: 169 SRVKAMEVDE 178
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 30.7 bits (66), Expect = 0.19
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = +2
Query: 281 RLKLLKLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDD 460
R KLLKLE L+ ++E + + E K + E+ R + LR + + NL E+ID+
Sbjct: 664 RTKLLKLEESNKSLIKKQEDVDSLE--KNIQTLKEDLRKSEEALRFSKLEAKNLREVIDN 721
>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 29.5 bits (63), Expect = 0.43
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +2
Query: 266 PHTRCRLKLLKLERIKDYLLM 328
PHT RLK K +IKDYL M
Sbjct: 55 PHTAIRLKERKANKIKDYLTM 75
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 28.7 bits (61), Expect = 0.76
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 188 PIPTRVGKKKRKAKGPDAALK 250
PIP+R G++KRK +GP +K
Sbjct: 208 PIPSRRGRRKRKMRGPILPVK 228
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 329 EEEFIRNQERLKPQEEKIEEERSKVDDLRGTPM 427
EE+ I ++E + EE++EEE + +D P+
Sbjct: 65 EEDIIDDEESAQVDEEELEEEEEEEEDATPEPV 97
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 26.2 bits (55), Expect = 4.0
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +2
Query: 350 QERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVG-SEHYVSILSFVD 526
Q+R K EE + E+ ++ L+ S + EE+ + + V S+HY +L ++
Sbjct: 1749 QKRRKELEEFMSSEQERIGFLKSQLESNNDSEEVRQEYEELTKRIVTLSDHY-RLLEYLL 1807
Query: 527 KDQLEPGCS 553
KD E CS
Sbjct: 1808 KD--ESSCS 1814
>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 245
Score = 25.8 bits (54), Expect = 5.3
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +1
Query: 196 YTSW*KEKES*GTRCGSQASASHASYKMSTQVVKTRKNKRLFVDGRGVHP*SRTLEA-TG 372
Y + +EK+ C S A +++ Q +KNK D +H SR LE+ G
Sbjct: 151 YLTLSREKQDQAIACVSDTVIPEAKWRIRVQTRFLKKNKSSLFDNPTIH--SRQLESMAG 208
Query: 373 RE 378
R+
Sbjct: 209 RK 210
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 25.8 bits (54), Expect = 5.3
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +2
Query: 296 KLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLR---GTPMSVGNLEEIIDDNH 466
KL + D MEEEF+ + + + EK SK L+ + + G L+E++ +N
Sbjct: 166 KLSGLDDSSFMEEEFVWQVDNVLQECEKKFTPHSKGSYLKENLKSELRKGRLDELMCENT 225
Query: 467 AI 472
A+
Sbjct: 226 AL 227
>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
XPF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 892
Score = 25.8 bits (54), Expect = 5.3
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = +2
Query: 251 LPQVTPHTRCRLKLLKLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMS 430
L VT + LK + ++ DY E++ + + +K E E E S +G P S
Sbjct: 408 LSTVTYDNKDSLKNMN-SKLVDYFQWREQYRKMSKSIKKPEPSKEREASNTTSRKGVPPS 466
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 25.8 bits (54), Expect = 5.3
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 287 KLLKLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKV 403
K+L+ +R+ M E IRN K Q+E I ++ +++
Sbjct: 1190 KILRYQRLTKEYEMRAEQIRNDYAAKCQDEPIPDDEARL 1228
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 25.0 bits (52), Expect = 9.3
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = +2
Query: 296 KLERIKDYLLMEEEFIRNQERLKPQEEKIE-EERSKVDDLRGTPMSVGNLEEIIDDNHAI 472
K + IK +L EE+ N+E + EE E EE V+D + ++ID +A
Sbjct: 358 KYDAIKHEILGEEDDDENEEDEEDSEETSESEEDESVNDEK---------PQVIDQTNAS 408
Query: 473 VSTSVGSEHYVSILSFVDKDQ 535
+ ++ Y++I+S VD ++
Sbjct: 409 L-VNLRKSIYLTIMSSVDFEE 428
>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 597
Score = 25.0 bits (52), Expect = 9.3
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +2
Query: 302 ERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDD 460
E+ + L +EE + + ++ EE S+ ++L G N EE+ D+
Sbjct: 59 EQADELELSDEELVALESSSDEEDGNAEENLSENEELSGKKKDAVNEEELYDN 111
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,280,724
Number of Sequences: 5004
Number of extensions: 40768
Number of successful extensions: 130
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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