Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18a22
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha...    28   1.2  
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    27   2.7  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    26   3.5  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    26   3.5  
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc...    26   4.7  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    25   8.2  
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa...    25   8.2  

>SPBC651.03c |gyp10||GTPase activating protein
           Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 373

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -1

Query: 173 ILKVVKEHAIPLSKHKTGYRLLIAIFDSVDDTVLVKKTIVSTLAA 39
           +L +   HA+PL +H   YRL   +  ++D TV   + I++ + A
Sbjct: 128 LLTLPFSHALPLMEHLVFYRLRDFMLPTLDGTVKQLQLILAVIKA 172


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +3

Query: 33  YIGSQSGHNSLLDKNSIVNRVKNSNQKAVSSLMFT*RNSMFLDHF*NCLK 182
           Y+G  + H      N IVN +KN++  A   L+     S +L H  N L+
Sbjct: 273 YLGIDNIHVMRDSLNKIVNALKNTDISAAPPLIELLNRSSWLKHLANILQ 322


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 233 KKSTFTSETNKFNIILNK 286
           K STFTS TN F++I  K
Sbjct: 590 KSSTFTSATNSFDLIWKK 607


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 33  YIGSQSGHNSLLDKNSIVNRVKNSNQKAVSS 125
           Y+G Q+   +     S + R+KNS  K++SS
Sbjct: 523 YVGYQTAALAACGSQSFLKRIKNSVNKSISS 553


>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 553

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -2

Query: 364 AGR--GVIHQNGYFLAALPIYKILVKIKFVQNNV 269
           AGR  GV +  GY L  LP+Y+I   + F Q  V
Sbjct: 184 AGRMIGVGNVLGYLLGYLPLYRIFSFLNFTQLQV 217


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = -1

Query: 140  LSKHKTGYRLLIAIFDSVDDTVLVKKTIVSTLAANIK 30
            +S  K    LL+   +++D+++++KKT  S + AN+K
Sbjct: 1519 ISLAKKSLNLLLEDDENLDNSLVLKKTHPSIVYANLK 1555


>SPBC27B12.12c |||CorA family magnesium ion transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 39  GSQSGHNSLLDKNSIVNRVKNSNQKAVSSL 128
           G+Q G+N+ L+K S  N   +S+   VSSL
Sbjct: 9   GAQGGNNNALEKTS-SNEATSSSSTQVSSL 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,295,320
Number of Sequences: 5004
Number of extensions: 43799
Number of successful extensions: 119
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)