Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18a22
         (587 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0105 - 14633097-14635529                                         29   2.7  
06_03_0689 + 23538367-23538474,23538583-23540557,23540647-23541092     29   2.7  
12_01_0588 + 4795620-4796093,4796124-4797476,4797575-4797827,479...    28   6.3  
10_01_0079 - 1027655-1027863,1028416-1028619,1028858-1029485           27   8.4  
02_02_0042 - 6297211-6297981                                           27   8.4  

>09_04_0105 - 14633097-14635529
          Length = 810

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -2

Query: 580 ETYIIHSNYDGGSFGTLEFVLAN 512
           E  I   NYD GSF TL  +LAN
Sbjct: 762 ENKIREGNYDSGSFATLSNILAN 784


>06_03_0689 + 23538367-23538474,23538583-23540557,23540647-23541092
          Length = 842

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +1

Query: 1   ILPQWSLAMSFILAARVDTIVFLTRTVSSTESKIAIRRRYPVLCLLKGIA 150
           + P+W     F  A   + +VF  +   S ++K+  R   PV  LL G A
Sbjct: 80  VSPRWDERFHFYCAHFAENVVFSVKVALSVDAKLIGRAYLPVRDLLSGEA 129


>12_01_0588 +
           4795620-4796093,4796124-4797476,4797575-4797827,
           4797989-4798108,4798542-4798564,4798734-4798841
          Length = 776

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -3

Query: 186 FFSDNFKSGQGTCYSFK*T*D--WIPPSD 106
           FFSD  + G+ TCY  +   +  W+PP+D
Sbjct: 37  FFSDELRLGRWTCYHGEEEEEKPWLPPAD 65


>10_01_0079 - 1027655-1027863,1028416-1028619,1028858-1029485
          Length = 346

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 81  YCSCQEDYCVHSGCQYK 31
           YCS QEDY   + C+YK
Sbjct: 212 YCSKQEDYLSFAPCEYK 228


>02_02_0042 - 6297211-6297981
          Length = 256

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 401 NMIVLMYLF*KRCRTRSHPSKWL 333
           N I++MYL   RC TR+ P +WL
Sbjct: 160 NKIIVMYL---RCFTRNRPCQWL 179


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,703,533
Number of Sequences: 37544
Number of extensions: 236498
Number of successful extensions: 525
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)